FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0624300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0304) R2 : 0.0079
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.122 (0.0639) R2dN8 : 0.0102 R2N8 : 0.0079
σ : 0.572
deviance : 150.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.78 0.508 3.02 -0.768 0.184 24 -0.825 -140 0.124 4.75 25.1 31 5.06 0.988
129.4 0.534 2.93 -0.147 0.195 2.38 -0.836 -- 0.12 4.77 25.1 31 5.06 0.988
118.31 0.507 3.02 -0.783 0.188 26.7 -- -156 0.116 3.99 25.22 31 5.06 1.43
131.13 0.537 2.93 -0.143 0.193 2.33 -- -- 0.124 4 25.1 31 5.06 0.988
120.12 0.51 3.02 -0.783 -- 26.9 -- -156 0.132 -- 25.2 31 5.06 1.43
145.11 0.565 2.93 -0.118 0.264 -- -0.665 -- 0.1 4.73 -- -- -- --
146.25 0.566 2.93 -0.115 0.259 -- -- -- 0.103 4.51 -- -- -- --
133.13 0.54 2.93 -0.137 -- 2.43 -- -- 0.13 -- 25.1 31 5.06 0.988
131.67 0.537 2.93 -- 0.19 2.32 -- -- 0.139 4.02 25.1 31 5.06 0.988
149.83 0.572 2.93 -0.105 -- -- -- -- 0.11 -- -- -- -- --
146.6 0.566 2.93 -- 0.257 -- -- -- 0.116 4.53 -- -- -- --
133.62 0.54 2.93 -- -- 2.41 -- -- 0.145 -- 25.1 31 5.06 0.988
150.12 0.572 2.93 -- -- -- -- -- 0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.06 temperature 25.0 30 > th dose dependent rect. 5 1
3 127.23 temperature 25.0 10 > th dose independent rect. 5 1
5 131.18 humidity 80.0 90 > th dose dependent rect. 2 1
6 131.55 humidity 90.0 90 > th dose independent rect. 2 1
7 131.67 radiation 1.0 90 > th dose dependent rect. 18 12
10 133.09 wind 3.0 90 < th dose independent rect. 2 1
12 133.15 radiation 1.0 90 > th dose dependent rect. 5 1
27 133.89 temperature 30.0 90 < th dose dependent rect. 2 1
39 133.92 wind 7.0 90 < th dose dependent rect. 2 1
43 134.20 atmosphere 1015.0 90 < th dose dependent rect. 2 1
45 134.31 humidity 80.0 10 > th dose dependent rect. 2 2
50 134.55 wind 1.0 90 > th dose independent rect. 2 1
51 134.55 atmosphere 1000.0 90 > th dose independent rect. 2 1
52 134.57 precipitation 0.1 90 < th dose independent rect. 2 1
53 134.57 precipitation 0.1 90 < th dose dependent rect. 2 1
55 134.58 temperature 10.0 90 > th dose independent rect. 2 1
57 134.58 temperature 30.0 90 < th dose independent rect. 2 1
58 134.58 humidity 50.0 90 > th dose independent rect. 2 1
62 134.58 atmosphere 1010.0 90 < th dose independent rect. 2 1
64 134.58 radiation 1.0 90 < th dose independent rect. 2 1
69 134.58 temperature 10.0 90 > th dose independent rect. 3 23
70 134.58 atmosphere 995.0 90 > th dose independent rect. 3 23
71 134.58 radiation 1.0 90 < th dose dependent rect. 2 1
81 134.92 precipitation 0.1 90 < th dose independent rect. 3 23
82 134.92 precipitation 0.1 90 < th dose dependent rect. 3 23
90 135.19 temperature 20.0 90 < th dose dependent rect. 2 1
105 135.50 wind 5.0 10 < th dose independent rect. 2 2
109 135.56 atmosphere 995.0 90 > th dose dependent rect. 2 1
118 135.83 wind 7.0 10 < th dose dependent rect. 2 2
119 135.87 atmosphere 1005.0 10 < th dose independent rect. 3 1
137 136.14 temperature 10.0 90 > th dose dependent rect. 2 1
139 136.17 atmosphere 1015.0 10 < th dose dependent rect. 2 2
145 136.25 wind 9.0 90 < th dose independent rect. 3 23
155 136.41 atmosphere 1000.0 10 > th dose independent rect. 4 22
157 136.42 temperature 10.0 10 > th dose independent rect. 2 2
159 136.42 temperature 30.0 10 < th dose independent rect. 2 2
160 136.42 humidity 50.0 10 > th dose independent rect. 2 2
163 136.42 atmosphere 995.0 10 > th dose independent rect. 2 2
166 136.42 radiation 1.0 10 < th dose independent rect. 2 2
171 136.42 temperature 10.0 10 > th dose independent rect. 4 22
172 136.42 radiation 1.0 10 < th dose dependent rect. 2 2
204 136.54 precipitation 0.1 10 < th dose independent rect. 4 22
210 136.54 precipitation 0.1 10 < th dose dependent rect. 4 22
215 136.57 wind 9.0 1440 < th dose independent rect. 3 3
216 136.57 temperature 10.0 1440 > th dose independent rect. 3 3
219 136.57 temperature 30.0 1440 < th dose independent rect. 3 3
223 136.57 humidity 50.0 1440 > th dose independent rect. 3 3
232 136.57 atmosphere 995.0 1440 > th dose independent rect. 3 3
233 136.57 radiation 20.0 1440 < th dose independent rect. 3 3
242 136.57 temperature 10.0 1440 > th dose independent rect. 6 21
259 136.87 humidity 50.0 30 > th dose independent rect. 4 22
262 136.90 humidity 80.0 30 > th dose dependent rect. 2 5
269 136.98 radiation 10.0 10 < th dose independent rect. 2 5
340 137.14 wind 5.0 10 < th dose dependent rect. 2 5
367 137.20 temperature 10.0 10 > th dose dependent rect. 2 2
389 137.40 humidity 70.0 10 > th dose independent rect. 16 10
396 137.44 temperature 30.0 30 < th dose independent rect. 4 22
398 137.45 atmosphere 995.0 10 > th dose dependent rect. 2 2
401 137.51 temperature 25.0 90 > th dose dependent rect. 1 3
412 137.64 wind 1.0 90 > th dose independent rect. 3 23
426 137.74 radiation 1.0 90 > th dose independent rect. 18 12
440 137.84 temperature 25.0 90 > th dose dependent rect. 2 1
442 137.87 temperature 25.0 90 > th dose independent rect. 2 1
463 137.88 radiation 1.0 1440 < th dose independent rect. 3 1
486 137.88 radiation 1.0 1440 < th dose dependent rect. 3 1
518 137.99 humidity 80.0 30 > th dose dependent rect. 2 8
536 138.06 humidity 70.0 10 > th dose independent rect. 14 12
541 138.08 wind 3.0 10 < th dose independent rect. 2 5
624 138.19 humidity 50.0 10 > th dose dependent rect. 16 10
668 138.46 wind 3.0 270 < th dose independent rect. 24 3
716 138.62 radiation 30.0 10 < th dose dependent rect. 2 5
719 138.64 precipitation 0.1 30 < th dose independent rect. 2 5
723 138.64 precipitation 0.1 30 < th dose dependent rect. 2 5
736 138.70 wind 9.0 1440 < th dose independent rect. 3 5
737 138.70 temperature 10.0 30 > th dose independent rect. 2 5
739 138.70 temperature 10.0 1440 > th dose independent rect. 3 5
742 138.70 temperature 30.0 30 < th dose independent rect. 2 5
743 138.70 temperature 30.0 1440 < th dose independent rect. 3 5
747 138.70 humidity 50.0 30 > th dose independent rect. 2 5
750 138.70 humidity 50.0 1440 > th dose independent rect. 3 5
755 138.70 atmosphere 995.0 30 > th dose independent rect. 2 5
756 138.70 atmosphere 995.0 1440 > th dose independent rect. 3 5
757 138.70 atmosphere 1015.0 30 < th dose independent rect. 2 5
761 138.70 temperature 10.0 30 > th dose independent rect. 7 19
762 138.70 temperature 10.0 1440 > th dose independent rect. 8 19
769 138.73 precipitation 0.1 30 < th dose independent rect. 7 19
772 138.73 precipitation 0.1 30 < th dose dependent rect. 7 19
775 138.74 wind 3.0 270 < th dose independent rect. 23 5
782 138.74 humidity 80.0 270 > th dose independent rect. 23 5
792 138.75 humidity 50.0 30 > th dose dependent rect. 14 12
799 138.77 atmosphere 1000.0 10 > th dose independent rect. 20 6
805 138.79 atmosphere 995.0 30 > th dose independent rect. 7 19
813 138.80 precipitation 0.1 30 < th dose independent rect. 2 18
816 138.80 precipitation 0.1 30 < th dose dependent rect. 2 18
842 138.83 wind 9.0 10 < th dose independent rect. 20 6
856 138.84 temperature 10.0 10 > th dose independent rect. 20 6
857 138.84 temperature 30.0 10 < th dose independent rect. 20 6
858 138.84 humidity 50.0 10 > th dose independent rect. 20 6
862 138.84 radiation 1.0 10 < th dose independent rect. 20 6
867 138.84 temperature 10.0 10 > th dose independent rect. 2 18
869 138.84 atmosphere 1015.0 10 < th dose independent rect. 2 18
873 138.84 radiation 1.0 10 < th dose dependent rect. 20 6
897 138.85 humidity 50.0 10 > th dose independent rect. 7 19
909 138.87 humidity 70.0 10 < th dose independent rect. 19 1
919 138.87 temperature 25.0 10 > th dose independent rect. 19 11
935 138.88 precipitation 0.1 10 < th dose independent rect. 20 6
946 138.88 precipitation 0.1 10 < th dose dependent rect. 20 6
953 138.89 temperature 25.0 10 > th dose dependent rect. 19 11
958 138.91 wind 9.0 10 < th dose independent rect. 2 18
962 138.92 temperature 10.0 1440 > th dose independent rect. 21 6
965 138.92 temperature 30.0 1440 < th dose independent rect. 21 6
969 138.92 humidity 50.0 1440 > th dose independent rect. 21 6
975 138.92 atmosphere 995.0 1440 > th dose independent rect. 21 6
976 138.92 radiation 1.0 1440 < th dose independent rect. 21 6
996 138.92 temperature 10.0 1440 > th dose independent rect. 3 18
999 138.92 atmosphere 995.0 10 > th dose independent rect. 2 18