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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0624500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.0382) R2 : 0.586
β1 : 0.0728 (0.141) R2dD : 0.000471 R2D : -0.00107
β2 : 2.56 (0.112) R2dC : 0.748 R2C : 0.211
β3 : -2.18 (0.158) R2dE : 0.296 R2E : -0.214
β4 : 2.67 (0.356) R2dD*C : 0.051 R2D*C : 0.0309
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.234 (0.0857) R2dN8 : 0.0125 R2N8 : 0.0359
σ : 0.691
deviance : 219.89
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_____
C
peak time of C : 9.78
E
wheather : temperature
threshold : 19.4
memory length : 521
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.18
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
220.16 0.697 3.8 0.222 2.47 -2.06 2.52 0.665 -0.209 9.68 20.04 533 1.45 --
219.89 0.691 3.82 0.0728 2.56 -2.18 2.67 -- -0.234 9.78 19.4 521 1.18 --
241.06 0.723 3.78 0.571 2.48 -2.18 -- 2.05 -0.154 9.97 19.72 519 0.93 --
245.68 0.73 3.81 0.183 2.51 -2.16 -- -- -0.25 10.1 19.65 532 0.809 --
382.76 0.911 3.89 0.699 -- -1.87 -- 1.89 -0.203 -- 23.88 1065 0.137 --
306.91 0.821 3.94 -0.406 1.68 -- 2.4 -- -0.713 9.49 -- -- -- --
328.06 0.848 3.94 -0.316 1.67 -- -- -- -0.709 9.56 -- -- -- --
375 0.902 3.88 0.332 -- -2.04 -- -- -0.206 -- 19.92 1161 8.02e-08 --
245.94 0.73 3.83 -- 2.39 -2.09 -- -- -0.296 10.2 20.18 511 0.541 --
491.87 1.04 3.98 -0.329 -- -- -- -- -0.705 -- -- -- -- --
330.7 0.851 3.93 -- 1.67 -- -- -- -0.674 9.57 -- -- -- --
377.83 0.905 3.88 -- -- -1.93 -- -- -0.254 -- 20.24 1154 7.45e-08 --
494.72 1.04 3.98 -- -- -- -- -- -0.669 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.94 radiation 40.0 14400 < th dose independent rect. 2 6
4 223.53 temperature 30.0 270 < th dose dependent rect. 5 8
11 225.71 radiation 40.0 14400 < th dose independent rect. 17 15
12 225.91 temperature 15.0 43200 > th dose independent rect. 24 1
17 226.47 temperature 20.0 720 > th dose dependent rect. 20 15
22 226.91 radiation 40.0 14400 < th dose independent rect. 6 2
27 227.21 temperature 20.0 270 > th dose dependent rect. 23 17
31 227.42 temperature 20.0 720 > th dose dependent sin 9 NA
40 227.79 humidity 60.0 43200 < th dose dependent rect. 19 14
43 227.91 atmosphere 1015.0 43200 > th dose dependent rect. 20 1
48 228.02 temperature 15.0 43200 < th dose independent rect. 1 2
52 228.12 atmosphere 1015.0 43200 > th dose dependent rect. 18 4
60 228.39 precipitation 0.1 43200 < th dose independent rect. 6 1
61 228.39 precipitation 0.1 43200 < th dose dependent rect. 6 1
65 228.40 atmosphere 1015.0 43200 > th dose dependent rect. 15 8
70 228.51 precipitation 0.1 43200 > th dose independent rect. 6 1
72 228.51 precipitation 0.1 43200 > th dose dependent rect. 6 1
80 228.77 humidity 60.0 43200 < th dose independent rect. 19 14
91 229.16 humidity 60.0 43200 < th dose independent rect. 19 9
98 229.24 temperature 20.0 1440 < th dose independent rect. 5 1
99 229.24 radiation 1.0 14400 < th dose dependent rect. 6 1
100 229.26 temperature 20.0 1440 > th dose independent rect. 5 1
112 229.51 temperature 30.0 720 < th dose dependent rect. 21 13
116 229.58 temperature 30.0 270 < th dose dependent rect. 4 19
117 229.61 humidity 60.0 43200 > th dose independent rect. 19 10
123 229.73 atmosphere 1015.0 43200 > th dose independent rect. 15 6
153 230.48 atmosphere 1015.0 43200 < th dose independent rect. 18 2
165 230.62 radiation 10.0 1440 < th dose independent rect. 16 14
171 230.67 temperature 20.0 1440 < th dose independent rect. 23 7
179 230.76 temperature 15.0 43200 < th dose dependent rect. 1 3
184 230.81 radiation 30.0 43200 > th dose dependent rect. 16 16
188 230.86 humidity 60.0 43200 > th dose independent rect. 19 14
189 230.89 temperature 15.0 1440 > th dose dependent rect. 2 3
197 231.00 temperature 20.0 1440 < th dose independent rect. 1 5
204 231.06 temperature 20.0 1440 > th dose independent rect. 23 8
206 231.07 radiation 10.0 1440 < th dose independent rect. 16 9
210 231.09 radiation 10.0 1440 < th dose independent rect. 16 7
212 231.09 radiation 30.0 43200 > th dose dependent rect. 7 1
230 231.13 radiation 10.0 1440 < th dose independent rect. 16 5
235 231.16 temperature 20.0 1440 > th dose independent rect. 1 6
246 231.22 temperature 25.0 270 < th dose independent rect. 5 7
253 231.28 temperature 15.0 1440 > th dose dependent rect. 2 1
256 231.34 humidity 90.0 43200 > th dose dependent rect. 4 2
269 231.44 temperature 15.0 1440 > th dose dependent rect. 4 1
283 231.56 temperature 25.0 1440 < th dose dependent rect. 2 3
297 231.67 radiation 30.0 1440 < th dose dependent rect. 18 7
302 231.70 temperature 25.0 1440 < th dose dependent rect. 2 1
312 231.74 temperature 30.0 720 < th dose dependent sin 8 NA
320 231.81 humidity 60.0 43200 < th dose independent rect. 19 4
323 231.83 humidity 90.0 43200 > th dose dependent rect. 3 4
353 232.00 humidity 60.0 43200 > th dose independent rect. 19 4
377 232.13 temperature 15.0 43200 > th dose independent sin 9 NA
395 232.21 temperature 25.0 1440 < th dose dependent rect. 24 5
408 232.30 temperature 20.0 1440 > th dose dependent rect. 20 5
430 232.42 radiation 30.0 43200 > th dose independent rect. 7 1
510 232.75 humidity 60.0 43200 < th dose dependent rect. 19 2
608 233.16 humidity 70.0 43200 < th dose dependent rect. 20 6
622 233.20 radiation 10.0 1440 < th dose dependent rect. 17 13
639 233.27 humidity 90.0 43200 > th dose dependent rect. 24 16
643 233.28 humidity 90.0 43200 > th dose dependent rect. 2 14
776 233.77 wind 7.0 43200 > th dose independent rect. 5 2
801 233.84 humidity 90.0 43200 > th dose dependent rect. 13 2
823 233.92 atmosphere 1015.0 43200 > th dose dependent rect. 13 2
841 233.96 atmosphere 1015.0 43200 > th dose dependent rect. 12 7
901 234.12 temperature 15.0 43200 < th dose independent sin 9 NA
951 234.30 humidity 90.0 43200 > th dose dependent sin 5 NA
955 234.31 humidity 60.0 43200 < th dose dependent rect. 7 2
960 234.32 radiation 10.0 1440 < th dose dependent rect. 16 15
967 234.34 humidity 70.0 43200 > th dose independent rect. 21 4