BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0623500 Os04g0623500|AK068638
(389 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0623500 Similar to (S)-2-hydroxy-acid oxidase, peroxis... 773 0.0
Os07g0152900 Similar to Glycolate oxidase (EC 1.1.3.15) (Fr... 623 e-179
Os03g0786100 Similar to Glycolate oxidase (EC 1.1.3.15) (Fr... 615 e-176
Os07g0616500 Similar to (S)-2-hydroxy-acid oxidase, peroxis... 429 e-120
Os04g0623600 Similar to (S)-2-hydroxy-acid oxidase, peroxis... 90 3e-18
Os08g0198700 Similar to Glycolate oxidase (EC 1.1.3.15) (Fr... 85 9e-17
>Os04g0623500 Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15)
(Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
acid oxidase)
Length = 389
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/389 (97%), Positives = 380/389 (97%)
Query: 1 SHADITSIPGSIASIPLPETEEMELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKE 60
SHADITSIPGSIASIPLPETEEMELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKE
Sbjct: 1 SHADITSIPGSIASIPLPETEEMELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKE 60
Query: 61 NREAFSRILFRPRILIDVSRINMATNVLGFNISMPIMIAPSAMQKMAHPEGELXXXXXXX 120
NREAFSRILFRPRILIDVSRINMATNVLGFNISMPIMIAPSAMQKMAHPEGEL
Sbjct: 61 NREAFSRILFRPRILIDVSRINMATNVLGFNISMPIMIAPSAMQKMAHPEGELATARAAS 120
Query: 121 XXGTIMTLSSWSTSSVEEVNSAAPGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVD 180
GTIMTLSSWSTSSVEEVNSAAPGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVD
Sbjct: 121 AAGTIMTLSSWSTSSVEEVNSAAPGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVD 180
Query: 181 TPRLGRREADIKNRFNLPPHLVLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVK 240
TPRLGRREADIKNRFNLPPHLVLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVK
Sbjct: 181 TPRLGRREADIKNRFNLPPHLVLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVK 240
Query: 241 WLQTITSLPILVKGVMTAEDTRLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAK 300
WLQTITSLPILVKGVMTAEDTRLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAK
Sbjct: 241 WLQTITSLPILVKGVMTAEDTRLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAK 300
Query: 301 GRLPVFLDGGVRRGTDVFKALALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELT 360
GRLPVFLDGGVRRGTDVFKALALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELT
Sbjct: 301 GRLPVFLDGGVRRGTDVFKALALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELT 360
Query: 361 MALSGCTSLAEITRNHVITDSDRIRRSRL 389
MALSGCTSLAEITRNHVITDSDRIRRSRL
Sbjct: 361 MALSGCTSLAEITRNHVITDSDRIRRSRL 389
>Os07g0152900 Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment)
Length = 369
Score = 623 bits (1607), Expect = e-179, Method: Compositional matrix adjust.
Identities = 299/362 (82%), Positives = 328/362 (90%)
Query: 23 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 82
M ITNV+EY+ +AKQKLPKMIYDYYASGAED+WTL+ENREAF+RILFRPRILIDVS+I+
Sbjct: 1 MGEITNVTEYQAIAKQKLPKMIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKID 60
Query: 83 MATNVLGFNISMPIMIAPSAMQKMAHPEGELXXXXXXXXXGTIMTLSSWSTSSVEEVNSA 142
MAT VLGF ISMPIMIAPSAMQKMAHP+GE GTIMTLSSW+TSSVEEV S
Sbjct: 61 MATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 143 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 202
PGIRFFQLYVYKDR +V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP L
Sbjct: 121 GPGIRFFQLYVYKDRRVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLT 180
Query: 203 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 262
LKNFE L+LGKMD+ +DSGLASYVA Q+DR+LSW DVKWLQTIT+LPILVKGV+TAEDTR
Sbjct: 181 LKNFEGLELGKMDQASDSGLASYVAGQIDRTLSWKDVKWLQTITTLPILVKGVITAEDTR 240
Query: 263 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 322
LAVE+GAAGIIVSNHGARQLDYVPATIS LEEVV+ A+G+LPVFLDGGVRRGTDVFKALA
Sbjct: 241 LAVENGAAGIIVSNHGARQLDYVPATISALEEVVKAARGQLPVFLDGGVRRGTDVFKALA 300
Query: 323 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 382
LGA+GVFIGRPV+FSLA GEAGVR VLQMLRDE ELTMALSGCTSLA+ITRNHVIT++D
Sbjct: 301 LGAAGVFIGRPVVFSLAAAGEAGVRNVLQMLRDEFELTMALSGCTSLADITRNHVITEAD 360
Query: 383 RI 384
++
Sbjct: 361 KL 362
>Os03g0786100 Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment)
Length = 369
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/364 (81%), Positives = 324/364 (89%)
Query: 23 MELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRIN 82
M ITNV EY+ +AKQKLPKMIYDYYASGAED+WTLKENREAFSRILFRPRILIDVS+I+
Sbjct: 1 MGEITNVMEYQAIAKQKLPKMIYDYYASGAEDEWTLKENREAFSRILFRPRILIDVSKID 60
Query: 83 MATNVLGFNISMPIMIAPSAMQKMAHPEGELXXXXXXXXXGTIMTLSSWSTSSVEEVNSA 142
M+ VLGF ISMPIMIAPSAMQKMAHP+GE GTIMTLSSW+TSSVEEV S
Sbjct: 61 MSATVLGFKISMPIMIAPSAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 120
Query: 143 APGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLV 202
PGIRFFQLYVYKDRN+V QLVRRAE AGFKAIALTVDTPRLGRREADIKNRF LPP+L
Sbjct: 121 GPGIRFFQLYVYKDRNVVEQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPYLT 180
Query: 203 LKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDTR 262
LKNFE LDL +MDK+NDSGLASYVA Q+DR+LSW DVKWLQ+ITSLPILVKGV+TAED R
Sbjct: 181 LKNFEGLDLAEMDKSNDSGLASYVAGQIDRTLSWKDVKWLQSITSLPILVKGVITAEDAR 240
Query: 263 LAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKALA 322
LAV SGAAGIIVSNHGARQLDYVPATIS LEEVV A GR+PV+LDGGVRRGTDVFKALA
Sbjct: 241 LAVHSGAAGIIVSNHGARQLDYVPATISALEEVVTAAAGRIPVYLDGGVRRGTDVFKALA 300
Query: 323 LGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDSD 382
LGA+GVFIGRPV+F+LA +GEAGVR VL+M+R+E ELTMALSGCTSLA+ITR H+ TD+D
Sbjct: 301 LGAAGVFIGRPVVFALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDAD 360
Query: 383 RIRR 386
R+ R
Sbjct: 361 RLAR 364
>Os07g0616500 Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15)
(Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
acid oxidase)
Length = 366
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/364 (56%), Positives = 262/364 (71%), Gaps = 2/364 (0%)
Query: 22 EMELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRI 81
E L NV EY++LAK+ LPKM YDY GAED+ TL+EN A++RI+ RPR+L+DVS+I
Sbjct: 2 EDNLPVNVREYQELAKKALPKMAYDYINGGAEDEHTLRENIAAYTRIILRPRVLVDVSKI 61
Query: 82 NMATNVLGFNISMPIMIAPSAMQKMAHPEGELXXXXXXXXXGTIMTLSSWSTSSVEEVNS 141
+M+T +LG+ + PI++AP+ K+AHPEGE IM LS S+ +E+V S
Sbjct: 62 DMSTTLLGYTMRSPIIVAPTGGHKLAHPEGEKATARAAASCNAIMVLSFSSSCKIEDVAS 121
Query: 142 AAPGIRFFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHL 201
+ IRF+QLYVYK+RN+ LVRRAE GFKA+ LTVDTP LGRREADI+N+ P
Sbjct: 122 SCNAIRFYQLYVYKNRNVSATLVRRAESCGFKALLLTVDTPMLGRREADIRNKMVFPRSG 181
Query: 202 VLKNFEALDLGKMDKTNDSGLASYVASQVDRSLSWTDVKWLQTITSLPILVKGVMTAEDT 261
L+ D D TN S L + + +D SLSW D++WL++ITS+PI +KG++TAED
Sbjct: 182 NLEGLMTTD--DHDTTNGSQLERFARATLDPSLSWKDIEWLKSITSMPIFLKGIVTAEDA 239
Query: 262 RLAVESGAAGIIVSNHGARQLDYVPATISCLEEVVREAKGRLPVFLDGGVRRGTDVFKAL 321
R AVE+G AG+IVSNHGARQLDY PATI+ LEEVVR G +PV +DGG+RRGTDVFKAL
Sbjct: 240 RRAVEAGVAGVIVSNHGARQLDYAPATIAALEEVVRAVAGAVPVLVDGGIRRGTDVFKAL 299
Query: 322 ALGASGVFIGRPVLFSLAVDGEAGVRKVLQMLRDELELTMALSGCTSLAEITRNHVITDS 381
ALGA V +GRPV F LA GEAG R V++ML ELE+ MAL GC S+ EITR+HV+T+
Sbjct: 300 ALGARAVMVGRPVFFGLAARGEAGARHVIEMLNGELEVAMALCGCRSVGEITRSHVMTEG 359
Query: 382 DRIR 385
DRIR
Sbjct: 360 DRIR 363
>Os04g0623600 Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15)
(Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
acid oxidase)
Length = 62
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 45/55 (81%)
Query: 15 IPLPETEEMELITNVSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRIL 69
+P P EM L+TNV EYE+LAK KLPKM+YD+YA AEDQWTL+EN EAFSRIL
Sbjct: 8 LPGPNCREMALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
>Os08g0198700 Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment)
Length = 70
Score = 85.1 bits (209), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 46/60 (76%)
Query: 69 LFRPRILIDVSRINMATNVLGFNISMPIMIAPSAMQKMAHPEGELXXXXXXXXXGTIMTL 128
LF PRILIDVS+I+M+ VLGF ISMP+MIAPSAMQKMAHP+GE GTIMT+
Sbjct: 4 LFCPRILIDVSKIDMSAIVLGFEISMPVMIAPSAMQKMAHPDGEYATAMAASAGGTIMTV 63
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,803,579
Number of extensions: 454992
Number of successful extensions: 991
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 6
Length of query: 389
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 286
Effective length of database: 11,657,759
Effective search space: 3334119074
Effective search space used: 3334119074
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)