Os08g0198700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).
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Os08g0198700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.25 | 0.394 | 11.3 | -1.13 | 0.605 | 0.547 | 0.0773 | 0.0477 | 0.213 | 21.4 | 21.72 | 467 | -- | -- |
| 70.21 | 0.39 | 11.3 | -1.14 | 0.619 | 0.539 | 0.108 | -- | 0.212 | 21.5 | 21.73 | 421 | -- | -- |
| 70.25 | 0.39 | 11.3 | -1.14 | 0.615 | 0.541 | -- | 0.0502 | 0.222 | 21.5 | 21.79 | 421 | -- | -- |
| 70.25 | 0.39 | 11.3 | -1.14 | 0.62 | 0.539 | -- | -- | 0.213 | 21.5 | 21.74 | 421 | -- | -- |
| 88.47 | 0.438 | 11.3 | -1.06 | -- | 0.691 | -- | 0.336 | 0.206 | -- | 21.87 | 731 | -- | -- |
| 83.85 | 0.429 | 11.3 | -0.96 | 0.683 | -- | 0.0231 | -- | 0.377 | 21 | -- | -- | -- | -- |
| 83.85 | 0.429 | 11.3 | -0.961 | 0.683 | -- | -- | -- | 0.377 | 21 | -- | -- | -- | -- |
| 88.48 | 0.438 | 11.3 | -1.22 | -- | 0.723 | -- | -- | 0.151 | -- | 21.8 | 697 | -- | -- |
| 102.19 | 0.471 | 11.3 | -- | 0.677 | 0.346 | -- | -- | 0.387 | 21.3 | 21.9 | 310 | -- | -- |
| 110.64 | 0.492 | 11.3 | -0.96 | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
| 108.17 | 0.487 | 11.2 | -- | 0.684 | -- | -- | -- | 0.484 | 20.9 | -- | -- | -- | -- |
| 124.67 | 0.52 | 11.3 | -- | -- | 0.439 | -- | -- | 0.325 | -- | 25.1 | 589 | -- | -- |
| 134.94 | 0.542 | 11.2 | -- | -- | -- | -- | -- | 0.479 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 2 | 69.12 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 4 | 69.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 20 | 70.18 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 29 | 70.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 31 | 70.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 32 | 70.65 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 87 | 71.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 88 | 71.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 98 | 71.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 107 | 71.30 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 125 | 71.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 178 | 71.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 182 | 71.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 225 | 72.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 243 | 72.40 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 21 |
| 262 | 72.52 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 313 | 72.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 373 | 73.20 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 14 |
| 417 | 73.40 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 6 |
| 479 | 73.64 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 597 | 73.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 616 | 74.00 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 3 |
| 636 | 74.04 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 678 | 74.11 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 9 |
| 712 | 74.18 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 730 | 74.22 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 760 | 74.27 | wind | 3 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 774 | 74.29 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 22 |
| 863 | 74.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 880 | 74.49 | wind | 3 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 967 | 74.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |