Os07g0616500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
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Os07g0616500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.33 | 0.468 | 12.8 | 0.4 | 2.97 | 0.665 | -1.19 | -2.24 | 0.19 | 16.1 | 25.6 | 1385 | -- | -- |
| 102.82 | 0.472 | 12.8 | 0.527 | 2.92 | 0.683 | -1.15 | -- | 0.265 | 16.1 | 22.5 | 30987 | -- | -- |
| 103.04 | 0.473 | 12.8 | 0.409 | 2.94 | 0.661 | -- | -2.13 | 0.2 | 16.1 | 25.7 | 1417 | -- | -- |
| 105.26 | 0.478 | 12.8 | 0.391 | 2.91 | 0.773 | -- | -- | 0.22 | 16.1 | 21.6 | 35018 | -- | -- |
| 370.98 | 0.902 | 12.8 | 0.705 | -- | 1.4 | -- | -0.509 | 0.0792 | -- | 25.7 | 1417 | -- | -- |
| 111.5 | 0.495 | 12.7 | 1.25 | 2.91 | -- | -1.08 | -- | 0.589 | 16.1 | -- | -- | -- | -- |
| 114.77 | 0.502 | 12.7 | 1.23 | 2.9 | -- | -- | -- | 0.583 | 16.1 | -- | -- | -- | -- |
| 372.05 | 0.902 | 12.8 | 0.821 | -- | 1.39 | -- | -- | 0.112 | -- | 25.7 | 1417 | -- | -- |
| 105.38 | 0.478 | 12.8 | -- | 2.89 | 1.1 | -- | -- | 0.0495 | 16.1 | 20.16 | 35111 | -- | -- |
| 571.82 | 1.12 | 12.7 | 1.12 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 154.9 | 0.582 | 12.7 | -- | 2.88 | -- | -- | -- | 0.445 | 16.1 | -- | -- | -- | -- |
| 389.63 | 0.922 | 12.8 | -- | -- | 1.43 | -- | -- | 0.00959 | -- | 25.7 | 1417 | -- | -- |
| 604.71 | 1.15 | 12.7 | -- | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.73 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 5 | 87.77 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 8 | 89.25 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 3 |
| 16 | 90.17 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 34 | 91.98 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 37 | 92.20 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 53 | 93.20 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 64 | 94.00 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 68 | 94.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 77 | 94.51 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 14 |
| 99 | 95.38 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 3 |
| 107 | 95.50 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 113 | 95.59 | radiation | 1.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 119 | 95.76 | humidity | 90.0 | 720 | < th | dose independent | rect. | 21 | 3 |
| 121 | 95.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 127 | 95.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 129 | 95.86 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 131 | 95.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 177 | 96.12 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 190 | 96.22 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 198 | 96.27 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 5 |
| 210 | 96.36 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 223 | 96.45 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 226 | 96.48 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 263 | 96.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 14 |
| 278 | 96.78 | temperature | 30.0 | 720 | < th | dose independent | rect. | 18 | 1 |
| 303 | 97.00 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 304 | 97.00 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 13 |
| 312 | 97.04 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 324 | 97.08 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 338 | 97.15 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 23 | 1 |
| 339 | 97.15 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 352 | 97.24 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 373 | 97.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 383 | 97.38 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 426 | 97.47 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 437 | 97.47 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 455 | 97.50 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 463 | 97.53 | radiation | 1.0 | 720 | < th | dose independent | sin | 13 | NA |
| 492 | 97.60 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 522 | 97.67 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 5 | 17 |
| 526 | 97.70 | radiation | 1.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 528 | 97.72 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 23 | 12 |
| 531 | 97.73 | wind | 7.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 538 | 97.77 | radiation | 1.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 546 | 97.82 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 15 |
| 551 | 97.84 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 552 | 97.84 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 553 | 97.84 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 560 | 97.87 | radiation | 1.0 | 720 | > th | dose independent | sin | 13 | NA |
| 562 | 97.88 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 567 | 97.90 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 571 | 97.91 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 573 | 97.92 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 575 | 97.92 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 587 | 97.95 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 602 | 97.99 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 608 | 98.01 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 619 | 98.04 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 631 | 98.04 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 649 | 98.07 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 650 | 98.07 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 653 | 98.07 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 685 | 98.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 721 | 98.16 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 729 | 98.16 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 802 | 98.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 20 |
| 823 | 98.29 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 824 | 98.29 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 831 | 98.30 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 844 | 98.32 | humidity | 90.0 | 720 | > th | dose dependent | sin | 17 | NA |
| 851 | 98.34 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 853 | 98.34 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 866 | 98.36 | temperature | 25.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 874 | 98.37 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 23 | 6 |
| 878 | 98.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 890 | 98.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 898 | 98.39 | temperature | 25.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 903 | 98.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 906 | 98.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 910 | 98.40 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 919 | 98.40 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 930 | 98.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 942 | 98.41 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 18 | 13 |