Os04g0623500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
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Os04g0623500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.2 | 0.578 | 10.8 | -1.75 | 0.478 | -1.42 | -1.78 | 1.08 | 0.108 | 15 | 24.1 | 1582 | -- | -- |
| 151.88 | 0.574 | 10.8 | -1.31 | 0.532 | -1.32 | -1.82 | -- | 0.182 | 15 | 23.8 | 1412 | -- | -- |
| 159.1 | 0.587 | 10.8 | -1.59 | 0.566 | -1.34 | -- | 0.584 | 0.171 | 16.3 | 24 | 1482 | -- | -- |
| 159.61 | 0.588 | 10.8 | -1.36 | 0.59 | -1.32 | -- | -- | 0.177 | 16.3 | 23.76 | 1411 | -- | -- |
| 173.12 | 0.613 | 10.8 | -1.79 | -- | -1.39 | -- | 0.983 | 0.107 | -- | 24 | 1668 | -- | -- |
| 228.92 | 0.709 | 10.6 | -0.795 | 0.446 | -- | -1.82 | -- | 0.777 | 15 | -- | -- | -- | -- |
| 237.72 | 0.722 | 10.6 | -0.834 | 0.5 | -- | -- | -- | 0.768 | 16.6 | -- | -- | -- | -- |
| 174.77 | 0.616 | 10.8 | -1.41 | -- | -1.3 | -- | -- | 0.157 | -- | 23.8 | 1669 | -- | -- |
| 204.22 | 0.666 | 10.7 | -- | 0.652 | -1.01 | -- | -- | 0.466 | 15.6 | 23.84 | 1074 | -- | -- |
| 251.02 | 0.74 | 10.6 | -0.853 | -- | -- | -- | -- | 0.755 | -- | -- | -- | -- | -- |
| 256.06 | 0.749 | 10.6 | -- | 0.515 | -- | -- | -- | 0.861 | 16.5 | -- | -- | -- | -- |
| 215.41 | 0.684 | 10.7 | -- | -- | -0.887 | -- | -- | 0.51 | -- | 23.97 | 376 | -- | -- |
| 270.24 | 0.767 | 10.6 | -- | -- | -- | -- | -- | 0.85 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.22 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 2 | 149.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 5 | 149.96 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 7 | 150.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 14 | 150.73 | wind | 5 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 20 | 150.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 21 | 150.96 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 40 | 151.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 43 | 151.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 48 | 151.68 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 49 | 151.76 | wind | 5 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 51 | 151.81 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 54 | 151.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 71 | 152.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 72 | 152.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 78 | 152.26 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 17 |
| 91 | 152.43 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 107 | 152.63 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 113 | 152.71 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 131 | 152.83 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 20 |
| 140 | 152.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 161 | 153.08 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 171 | 153.15 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 194 | 153.26 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 197 | 153.27 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 213 | 153.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 217 | 153.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 219 | 153.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 223 | 153.43 | wind | 5 | 14400 | > th | dose independent | sin | 2 | NA |
| 237 | 153.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 239 | 153.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 252 | 153.59 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 267 | 153.67 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 284 | 153.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 313 | 153.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 329 | 153.92 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 333 | 153.93 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 363 | 154.03 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 367 | 154.04 | wind | 5 | 14400 | > th | dose dependent | sin | 1 | NA |
| 382 | 154.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 460 | 154.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 461 | 154.33 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 485 | 154.42 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 516 | 154.51 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 542 | 154.62 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 592 | 154.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 637 | 154.99 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 660 | 155.09 | wind | 5 | 14400 | < th | dose independent | sin | 2 | NA |
| 723 | 155.32 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 779 | 155.50 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 831 | 155.64 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 880 | 155.81 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 902 | 155.87 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 919 | 155.91 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 941 | 155.98 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 963 | 156.04 | wind | 5 | 14400 | > th | dose dependent | rect. | 24 | 21 |