Os07g0152900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).
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Os07g0152900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycolate oxidase (EC 1.1.3.15) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.32 | 0.371 | 15.1 | -0.389 | 0.522 | -0.636 | 0.25 | -1.92 | -0.375 | 23.6 | 21.5 | 1960 | -- | -- |
| 68.65 | 0.386 | 15 | 0.0502 | 0.579 | -0.457 | 0.166 | -- | -0.25 | 23.4 | 22.5 | 753 | -- | -- |
| 62.58 | 0.368 | 15.1 | -0.392 | 0.518 | -0.634 | -- | -1.9 | -0.375 | 23.6 | 21.52 | 1941 | -- | -- |
| 68.73 | 0.386 | 15 | 0.0466 | 0.576 | -0.457 | -- | -- | -0.249 | 23.4 | 22.4 | 734 | -- | -- |
| 78.17 | 0.412 | 15.1 | -0.405 | -- | -0.624 | -- | -1.95 | -0.376 | -- | 21.58 | 1698 | -- | -- |
| 78.61 | 0.416 | 15.1 | -0.0982 | 0.498 | -- | 0.177 | -- | -0.409 | 23.8 | -- | -- | -- | -- |
| 78.74 | 0.416 | 15.1 | -0.105 | 0.498 | -- | -- | -- | -0.41 | 23.7 | -- | -- | -- | -- |
| 81.94 | 0.423 | 15 | 0.0257 | -- | -0.434 | -- | -- | -0.28 | -- | 22.2 | 1722 | -- | -- |
| 68.78 | 0.386 | 15 | -- | 0.576 | -0.451 | -- | -- | -0.256 | 23.5 | 22.45 | 733 | -- | -- |
| 94.33 | 0.454 | 15.1 | -0.0907 | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
| 79.03 | 0.416 | 15.1 | -- | 0.497 | -- | -- | -- | -0.398 | 23.7 | -- | -- | -- | -- |
| 81.46 | 0.422 | 15 | -- | -- | -0.387 | -- | -- | -0.201 | -- | 24.51 | 1644 | -- | -- |
| 94.55 | 0.454 | 15.1 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 25 | 62.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 33 | 63.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 67 | 63.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 73 | 63.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 77 | 63.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 112 | 63.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 148 | 63.78 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 254 | 64.10 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 301 | 64.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 360 | 64.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 420 | 64.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 429 | 64.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 19 |
| 430 | 64.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 457 | 64.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 476 | 64.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 540 | 64.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 579 | 64.94 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 19 |
| 662 | 65.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 772 | 65.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 788 | 65.44 | temperature | 15 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 867 | 65.58 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 898 | 65.64 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 903 | 65.65 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 908 | 65.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 971 | 65.75 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |