Os04g0623600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0623600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to (S)-2-hydroxy-acid oxidase, peroxisomal (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.01 | 0.554 | 10.1 | -1.96 | 1.34 | -0.793 | -1.93 | -2.51 | 0.723 | 15.6 | 69 | 5805 | -- | -- |
| 147.56 | 0.566 | 10.2 | -1.94 | 1.41 | -0.925 | -2.06 | -- | 0.767 | 15.8 | 69 | 6343 | -- | -- |
| 149.06 | 0.569 | 10.2 | -2 | 1.35 | -0.738 | -- | -2.86 | 0.719 | 15.7 | 69 | 6064 | -- | -- |
| 152.09 | 0.574 | 10.1 | -2.25 | 1.36 | -0.925 | -- | -- | 0.808 | 15.7 | 61.56 | 20872 | -- | -- |
| 209.16 | 0.677 | 10.2 | -2.02 | -- | 0.749 | -- | -1.32 | 0.617 | -- | 73 | 5588 | -- | -- |
| 161.34 | 0.595 | 10.2 | -1.84 | 1.37 | -- | -1.84 | -- | 0.685 | 15.6 | -- | -- | -- | -- |
| 171.61 | 0.613 | 10.2 | -1.87 | 1.36 | -- | -- | -- | 0.674 | 15.7 | -- | -- | -- | -- |
| 219.33 | 0.693 | 10.2 | -1.98 | -- | 0.739 | -- | -- | 0.631 | -- | 73 | 5588 | -- | -- |
| 216.48 | 0.685 | 10.1 | -- | 1.39 | -1.37 | -- | -- | 0.778 | 15.7 | 38.04 | 8074 | -- | -- |
| 274.59 | 0.774 | 10.2 | -1.92 | -- | -- | -- | -- | 0.638 | -- | -- | -- | -- | -- |
| 263.53 | 0.759 | 10.1 | -- | 1.4 | -- | -- | -- | 0.882 | 15.7 | -- | -- | -- | -- |
| 322.94 | 0.84 | 10.1 | -- | -- | 0.697 | -- | -- | 0.851 | -- | 73 | 5588 | -- | -- |
| 372.27 | 0.901 | 10.1 | -- | -- | -- | -- | -- | 0.852 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 2 | 122.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 3 | 122.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 4 | 122.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 5 | 122.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 6 | 123.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 7 | 123.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 8 | 123.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 9 | 123.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 12 | 123.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 14 | 123.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 15 | 123.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 16 | 123.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 17 | 124.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 19 | 124.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 22 | 124.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 41 | 125.63 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 45 | 125.79 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 57 | 126.29 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 62 | 126.36 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 71 | 127.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 72 | 127.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 73 | 127.98 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 74 | 127.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 93 | 128.84 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 95 | 128.91 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 100 | 129.09 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 103 | 129.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 120 | 130.08 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 126 | 130.23 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 142 | 130.47 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 149 | 130.60 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 166 | 130.91 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 8 |
| 169 | 130.95 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 177 | 131.15 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 187 | 131.27 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 190 | 131.40 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 199 | 131.49 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 207 | 131.58 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 228 | 131.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 247 | 131.88 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 251 | 131.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 254 | 131.92 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 256 | 131.93 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 258 | 131.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 259 | 131.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 264 | 131.98 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 271 | 132.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 278 | 132.12 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 283 | 132.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 294 | 132.21 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 323 | 132.42 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 325 | 132.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 326 | 132.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 331 | 132.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 333 | 132.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 342 | 132.52 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 352 | 132.62 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 3 | NA |
| 353 | 132.62 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 367 | 132.73 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 3 | NA |
| 371 | 132.76 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 381 | 132.84 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 386 | 132.87 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 425 | 133.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 435 | 133.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 445 | 133.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 446 | 133.25 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 455 | 133.31 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 463 | 133.36 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 490 | 133.47 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 8 |
| 493 | 133.48 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 504 | 133.55 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 513 | 133.59 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 3 |
| 523 | 133.63 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 525 | 133.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 526 | 133.64 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 8 |
| 542 | 133.70 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 597 | 133.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 642 | 134.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 646 | 134.08 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 649 | 134.09 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 657 | 134.11 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 687 | 134.19 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 696 | 134.21 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 698 | 134.22 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 768 | 134.39 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 784 | 134.42 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 790 | 134.43 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 815 | 134.48 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 893 | 134.67 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |