BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0623600 Os04g0623600|AK068129
(62 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18360.1 | chr4:10146141-10148386 REVERSE LENGTH=369 76 3e-15
AT3G14420.1 | chr3:4821804-4823899 FORWARD LENGTH=368 74 2e-14
AT3G14415.2 | chr3:4818667-4820748 FORWARD LENGTH=374 73 4e-14
AT3G14150.1 | chr3:4690667-4692679 REVERSE LENGTH=364 60 2e-10
AT3G14130.1 | chr3:4685844-4687852 REVERSE LENGTH=364 60 3e-10
>AT4G18360.1 | chr4:10146141-10148386 REVERSE LENGTH=369
Length = 368
Score = 76.3 bits (186), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 38/44 (86%)
Query: 19 VTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
+TNV EYE++AK KLPKMVYD+YA AEDQWTL+EN AFSRIL
Sbjct: 3 ITNVMEYEKIAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRIL 46
>AT3G14420.1 | chr3:4821804-4823899 FORWARD LENGTH=368
Length = 367
Score = 73.6 bits (179), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 19 VTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
+TNV EY+ +AK KLPKMVYD+YA AEDQWTL+EN AF+RIL
Sbjct: 3 ITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARIL 46
>AT3G14415.2 | chr3:4818667-4820748 FORWARD LENGTH=374
Length = 373
Score = 72.8 bits (177), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 19 VTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
+TNV EY+ +AK KLPKMVYD+YA AEDQWTL+EN AF+RIL
Sbjct: 3 ITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARIL 46
>AT3G14150.1 | chr3:4690667-4692679 REVERSE LENGTH=364
Length = 363
Score = 60.1 bits (144), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 16 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
M + NV E++ELAK LPKM YDFY AEDQ TL EN +AF RI+
Sbjct: 1 MDQIVNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIM 47
>AT3G14130.1 | chr3:4685844-4687852 REVERSE LENGTH=364
Length = 363
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 33/47 (70%)
Query: 16 MALVTNVCEYEELAKHKLPKMVYDFYAVDAEDQWTLRENSEAFSRIL 62
M + NV E++ELAK LPKM YDFY AEDQ TL EN +AF RI+
Sbjct: 1 MDQIVNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIM 47
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,382,308
Number of extensions: 40224
Number of successful extensions: 88
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 11,106,569
Length adjustment: 35
Effective length of query: 27
Effective length of database: 10,147,009
Effective search space: 273969243
Effective search space used: 273969243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)