BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0599800 Os04g0599800|AK103675
(504 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0599800 WD40-like domain containing protein 1047 0.0
Os02g0700100 Similar to WD-repeat protein 858 0.0
Os09g0242300 Similar to WD-repeat protein 664 0.0
Os01g0972900 Similar to Clone ZZD405 mRNA sequence. (Fragment) 342 5e-94
Os03g0123300 Similar to Cell cycle switch protein 328 8e-90
Os10g0494800 Similar to Katanin p80 WD40-containing subunit... 79 6e-15
Os01g0780400 WD40-like domain containing protein 70 4e-12
>Os04g0599800 WD40-like domain containing protein
Length = 504
Score = 1047 bits (2707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MDAGSHSISSEKSSRYVAPRQPLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM 60
MDAGSHSISSEKSSRYVAPRQPLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM
Sbjct: 1 MDAGSHSISSEKSSRYVAPRQPLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM 60
Query: 61 DMAHYLLTEPRKDKENAAASPAKEAYRKLLAEKILNNRTRILSFRNKPPEPESILTELRA 120
DMAHYLLTEPRKDKENAAASPAKEAYRKLLAEKILNNRTRILSFRNKPPEPESILTELRA
Sbjct: 61 DMAHYLLTEPRKDKENAAASPAKEAYRKLLAEKILNNRTRILSFRNKPPEPESILTELRA 120
Query: 121 DAASIQAKPAKQRRYIPQSAERTLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDAT 180
DAASIQAKPAKQRRYIPQSAERTLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDAT
Sbjct: 121 DAASIQAKPAKQRRYIPQSAERTLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDAT 180
Query: 181 NSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRV 240
NSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRV
Sbjct: 181 NSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRV 240
Query: 241 GSLAWNNNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDN 300
GSLAWNNNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDN
Sbjct: 241 GSLAWNNNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDN 300
Query: 301 LLHIWDVSMASSMPSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWN 360
LLHIWDVSMASSMPSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWN
Sbjct: 301 LLHIWDVSMASSMPSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWN 360
Query: 361 THTGACLNSIDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSRV 420
THTGACLNSIDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSRV
Sbjct: 361 THTGACLNSIDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSRV 420
Query: 421 LFTAQVIFCSLYLPFKLTNIALNRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGAP 480
LFTAQVIFCSLYLPFKLTNIALNRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGAP
Sbjct: 421 LFTAQVIFCSLYLPFKLTNIALNRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGAP 480
Query: 481 EAPKTATKGSHTGMFNNSNHIHIR 504
EAPKTATKGSHTGMFNNSNHIHIR
Sbjct: 481 EAPKTATKGSHTGMFNNSNHIHIR 504
>Os02g0700100 Similar to WD-repeat protein
Length = 469
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/502 (83%), Positives = 446/502 (88%), Gaps = 35/502 (6%)
Query: 1 MDAGSHSISSEKSSRYVAPRQPLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM 60
MDAGSHSISSEKS +APR PLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM
Sbjct: 1 MDAGSHSISSEKS-HGLAPRPPLQEAGSRPYMPSLSTASRNPSAKCYGDRFIPDRSAMDM 59
Query: 61 DMAHYLLTEPRKDKENAAASPAKEAYRKLLAEKILNNRTRILSFRNKPPEPESILTELRA 120
DMAHYLLTEP+KDKENAAASP+KE YR+LLAEK+LNNRTRIL+FRNKPPEPE++ A
Sbjct: 60 DMAHYLLTEPKKDKENAAASPSKEVYRRLLAEKLLNNRTRILAFRNKPPEPENVSA---A 116
Query: 121 DAASI-QAKPAKQRRYIPQSAERTLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDA 179
D AS QAKPAKQRRYIPQSAERTLDAP+LVDDYYLNLLDWGS NVLSIALG++VYLWDA
Sbjct: 117 DTASTHQAKPAKQRRYIPQSAERTLDAPDLVDDYYLNLLDWGSKNVLSIALGDTVYLWDA 176
Query: 180 TNSSTSELVTVDEDNGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSR 239
++ STSELVTVDED+GP+TSVSWAPDG+H+AVGLNSSD+QLWDTSSNRLLRT+RGVH+SR
Sbjct: 177 SSGSTSELVTVDEDSGPITSVSWAPDGQHVAVGLNSSDIQLWDTSSNRLLRTLRGVHESR 236
Query: 240 VGSLAWNNNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGND 299
VGSLAWNNNILTTGGMDG IVNNDVRIRNHVVQTYQGH QEVCGLKWSGSGQQLASGGND
Sbjct: 237 VGSLAWNNNILTTGGMDGNIVNNDVRIRNHVVQTYQGHSQEVCGLKWSGSGQQLASGGND 296
Query: 300 NLLHIWDVSMASSMPSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFW 359
NLLHIWDVSMASS+PSAGR QWLHRLEDH AAVKALAWCPFQSNLLA+GGGGSDRCIKFW
Sbjct: 297 NLLHIWDVSMASSVPSAGRNQWLHRLEDHTAAVKALAWCPFQSNLLATGGGGSDRCIKFW 356
Query: 360 NTHTGACLNSIDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSR 419
NTHTGACLNS+DTGSQVC+L+WNKNERELLSSHGF QNQLTLWKYPSMVKMAELTGHTSR
Sbjct: 357 NTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSR 416
Query: 420 VLFTAQVIFCSLYLPFKLTNIALNRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGA 479
VLF AQ SPDG TVASAAADETLRFWNVFG+
Sbjct: 417 VLFMAQ------------------------------SPDGCTVASAAADETLRFWNVFGS 446
Query: 480 PEAPKTATKGSHTGMFNNSNHI 501
PEAPK A K SHTGMFN+ NH+
Sbjct: 447 PEAPKPAAKASHTGMFNSFNHL 468
>Os09g0242300 Similar to WD-repeat protein
Length = 502
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/466 (68%), Positives = 373/466 (80%), Gaps = 33/466 (7%)
Query: 26 AGSR-PYMPSLSTASRNPSAKCYGDRFIPDRSAMDMDMAHYLLTEPRKDKENA-AASPAK 83
AG+R PYMP L S+NPSAKCYGDRFIPDRSAMDMDMA++LLTEP+K+KEN SPA+
Sbjct: 29 AGARGPYMPPLCIKSKNPSAKCYGDRFIPDRSAMDMDMAYFLLTEPKKEKENTDMLSPAE 88
Query: 84 EAYRKLLAEKILNNRTRILSFRNKPPEPESILTELRADA-ASIQAKPAKQRRYIPQSAER 142
EAY++LLAEK+LNNR+RIL+FRNKPPEPE I+ +L + S Q KPA++ R+IPQS+ER
Sbjct: 89 EAYKRLLAEKLLNNRSRILAFRNKPPEPEGIVQQLLYETLTSSQTKPARKCRHIPQSSER 148
Query: 143 TLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDATNSSTSELVTVDEDNGPVTSVSW 202
TLDAP +VDD+YLN+LDWG NV+SIALGN++YLW++ + S +LVT+DED+GP+TSVSW
Sbjct: 149 TLDAPGIVDDFYLNILDWGCKNVMSIALGNTLYLWNSADGSIMDLVTIDEDDGPITSVSW 208
Query: 203 APDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRVGSLAWNNNILTTGGMDGKIVNN 262
+ DG+ IAVGLNSSD+QLWDTSSNR+LRT+ GVH SRVGSLAWN NILTTGGMDG IVNN
Sbjct: 209 SCDGQWIAVGLNSSDIQLWDTSSNRMLRTLHGVHQSRVGSLAWNKNILTTGGMDGNIVNN 268
Query: 263 DVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASSMPSAGRTQWL 322
DVR+R+HVV Y+GH+ EVCGL+WSGSGQQLASGGNDNL+HIWDVSMASS S G +WL
Sbjct: 269 DVRMRSHVVHIYRGHEDEVCGLRWSGSGQQLASGGNDNLVHIWDVSMASSNLSLGHNRWL 328
Query: 323 HRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWNTHTGACLNSIDTGSQVCSLVWN 382
HR DHLAAVKALAWCPFQSNLLASGGGG DRCI+FWNTHTG CLNS+DTGSQVC L+WN
Sbjct: 329 HRFGDHLAAVKALAWCPFQSNLLASGGGGDDRCIRFWNTHTGLCLNSVDTGSQVCGLLWN 388
Query: 383 KNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSRVLFTAQVIFCSLYLPFKLTNIAL 442
KNE+ELLS+HG+ QN L LWKYPSMVK+AEL HT+RVL
Sbjct: 389 KNEKELLSAHGYVQNSLALWKYPSMVKLAELEDHTARVL--------------------- 427
Query: 443 NRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGAPEAPKTATK 488
CL QSPDG TVAS AADETLR W +F E K K
Sbjct: 428 ------CLA---QSPDGFTVASVAADETLRLWKIFETSEDAKPVFK 464
>Os01g0972900 Similar to Clone ZZD405 mRNA sequence. (Fragment)
Length = 478
Score = 342 bits (876), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 196/503 (38%), Positives = 281/503 (55%), Gaps = 81/503 (16%)
Query: 8 ISSEKSSRYVAPR--QPLQEAGSRPYMPSLSTASR---------NPSAKCYGDRFIPDRS 56
++++ S + PR P AG P++++ +R +PS Y DRFIP RS
Sbjct: 1 MATDASPKPAPPRLNVPPAMAGGLRLDPAVASPARLLLDVPKTPSPSKTTYSDRFIPCRS 60
Query: 57 AMDMDMAHYLLTEPRKDKENAAASPAKEAYRKLLAEKILNN----------RTRILSFRN 106
+ + ++ L + +D+ + +++ Y +LL +I T + F+
Sbjct: 61 SSRLH--NFALLD--RDRASPSSTTDDAPYSRLLRAEIFGPDSPSPAPSSPNTNLFRFKT 116
Query: 107 KPPEPESILT--------ELRADAASIQAK-PAKQRRYIPQSAERTLDAPELVDDYYLNL 157
P P+S A S ++ P K R +P++ + LDAP L DD+YLNL
Sbjct: 117 DHPSPKSPFAASAAATAGHYDCTAGSAESSTPRKPPRKVPKTPHKVLDAPSLQDDFYLNL 176
Query: 158 LDWGSSNVLSIALGNSVYLWDATNSSTSELVTVDEDNGP---VTSVSWAPDGRHIAVGLN 214
+DW S N L++ LGN VYLW A+N ++L D GP V +V W +G ++A+G +
Sbjct: 177 VDWSSQNTLAVGLGNCVYLWSASNCKVTKLC----DLGPRDSVCAVHWTREGSYLAIGTS 232
Query: 215 SSDVQLWDTSSNRLLRTMRGVHDSRVGSLAWNNNILTTGGMDGKIVNNDVRIRNHVVQTY 274
DVQ+WD+S + +R M G H +R G LAW++ IL++G D I+ +D+R+ + + +
Sbjct: 233 LGDVQIWDSSRCKRIRNMGG-HQTRTGVLAWSSRILSSGSRDKNILQHDIRVPSDYISKF 291
Query: 275 QGHQQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASSMPSAGRTQWLHRLEDHLAAVKA 334
GH+ EVCGLKWS ++LASGGNDN L +W+ S P + RL +H AAVKA
Sbjct: 292 SGHRSEVCGLKWSHDDRELASGGNDNQLLVWN--QRSQQP-------ILRLTEHTAAVKA 342
Query: 335 LAWCPFQSNLLASGGGGSDRCIKFWNTHTGACLNSIDTGSQVCSLVWNKNERELLSSHGF 394
+AW P Q LLASGGG +DRCI+FWNT G LNS+DTGSQVC+L W KN EL+S+HG+
Sbjct: 343 IAWSPHQQGLLASGGGTADRCIRFWNTVNGNMLNSVDTGSQVCNLAWCKNVNELVSTHGY 402
Query: 395 AQNQLTLWKYPSMVKMAELTGHTSRVLFTAQVIFCSLYLPFKLTNIALNRLLITCLVVIL 454
+QNQ+ +WKYPSM K+A LTGHT RVL+ A
Sbjct: 403 SQNQIMVWKYPSMSKVATLTGHTLRVLYLAM----------------------------- 433
Query: 455 QSPDGLTVASAAADETLRFWNVF 477
SPDG T+ + A DETLRFWN+F
Sbjct: 434 -SPDGQTIVTGAGDETLRFWNIF 455
>Os03g0123300 Similar to Cell cycle switch protein
Length = 523
Score = 328 bits (840), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 165/348 (47%), Positives = 225/348 (64%), Gaps = 41/348 (11%)
Query: 134 RYIPQSAERTLDAPELVDDYYLNLLDWGSSNVLSIALGNSVYLWDATNSSTSELVTVDED 193
R IP+S + LDAP L DD+YLNL+DW S N+L++ LGN VYLW+A +S ++L + D
Sbjct: 196 RKIPRSPYKVLDAPALQDDFYLNLVDWSSHNILAVGLGNCVYLWNACSSKVTKLCDLGVD 255
Query: 194 NGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRVGSLAWNNNILTTG 253
+ V SV WA G H+AVG N VQ+WD + + +RTM H RVG+LAWN+++L++G
Sbjct: 256 DN-VCSVGWAQRGTHLAVGTNQGKVQVWDATRCKRIRTMES-HRMRVGALAWNSSLLSSG 313
Query: 254 GMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASSM 313
D I+++D+R ++ + GH+ EVCGLKWS +QLASGGNDN L++W+ S+
Sbjct: 314 SRDKSILHHDIRAQDDYISRLAGHKSEVCGLKWSYDNRQLASGGNDNRLYVWN--QHSAH 371
Query: 314 PSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWNTHTGACLNSIDTG 373
P + + +H AAVKA+AW P LLASGGG +DRCI+FWNT T LN +DTG
Sbjct: 372 P-------VLKYTEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNMHLNCVDTG 424
Query: 374 SQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSRVLFTAQVIFCSLYL 433
SQVC+LVW+KN EL+S+HG++QNQ+ +W+YP+M K+A LTGHT RVL+ A
Sbjct: 425 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAI-------- 476
Query: 434 PFKLTNIALNRLLITCLVVILQSPDGLTVASAAADETLRFWNVFGAPE 481
SPDG T+ + A DETLRFWNVF +P+
Sbjct: 477 ----------------------SPDGQTIVTGAGDETLRFWNVFPSPK 502
>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
subunit B1) (p80 katanin)
Length = 875
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 196 PVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRVGSLAWN--NNILTTG 253
PV SVS+ I G +S +++WD +++RT G H S SL ++ +G
Sbjct: 61 PVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTG-HRSSCASLDFHPFGEFFASG 119
Query: 254 GMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDNLLHIWDVSMASSM 313
D + D+R + + TY+GH + + L+++ G+ + SGG+DN + IWD+
Sbjct: 120 SSDTNMKIWDMR-KKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDL------ 172
Query: 314 PSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWNTHTGACLNS---- 369
+AG+ LH +H + L + P + LLA+ G +D+ +KFW+ T + S
Sbjct: 173 -TAGK--LLHDFRNHEGPINCLDFHPHEF-LLAT--GSADKTVKFWDLETFELIGSSGPE 226
Query: 370 -----IDTGSQVCSLVWNKNERELL 389
S V S+ +NK+ + L
Sbjct: 227 NSREYFVPASVVRSMTFNKDGKSLF 251
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 187 LVTVDEDNGPVTSVSWAPDGRHIAVGLNSSDVQLWDTSSNRLLRTMRGVHDSRVGSLAWN 246
L+++ G V +V + + G ++ ++LWD +++R++ G H S S+ ++
Sbjct: 53 LLSLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-HRSSCTSVEFH 111
Query: 247 --NNILTTGGMDGKIVNNDVRIRNHVVQTYQGHQQEVCGLKWSGSGQQLASGGNDNLLHI 304
+G D + D++ + + TY+GH+ + ++++ G+ + +GG DN++ +
Sbjct: 112 PFGEFFASGSSDTDLKIWDIK-KKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKV 170
Query: 305 WDVSMASSMPSAGRTQWLHRLEDHLAAVKALAWCPFQSNLLASGGGGSDRCIKFWNTHTG 364
WD+ +AG+ LH + H ++ + + P Q LLA+ G +DR +KFW+ T
Sbjct: 171 WDL-------TAGK--LLHDFKFHSGQIRCIDFHP-QEFLLAT--GSADRTVKFWDLETF 218
Query: 365 ACLNS 369
+ S
Sbjct: 219 ELIGS 223
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,489,635
Number of extensions: 816330
Number of successful extensions: 3154
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 3130
Number of HSP's successfully gapped: 12
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)