Os04g0599800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
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Os04g0599800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.88 | 0.627 | 5.86 | -0.713 | 2.49 | 1.01 | 0.76 | -3.82 | 0.588 | 21.7 | 25.8 | 285 | -- | -- |
| 181.54 | 0.628 | 5.81 | -0.278 | 2.47 | 0.642 | 0.737 | -- | 0.678 | 21.6 | 25.3 | 326 | -- | -- |
| 179.97 | 0.625 | 5.86 | -0.724 | 2.47 | 1.01 | -- | -3.78 | 0.6 | 21.7 | 26 | 308 | -- | -- |
| 183.42 | 0.631 | 5.81 | -0.312 | 2.47 | 0.65 | -- | -- | 0.677 | 21.7 | 25.4 | 326 | -- | -- |
| 442.07 | 0.979 | 5.9 | -1.52 | -- | 2.59 | -- | -5.14 | 0.273 | -- | 24.4 | 686 | -- | -- |
| 188.32 | 0.643 | 5.81 | -0.178 | 2.61 | -- | 0.827 | -- | 0.719 | 21.3 | -- | -- | -- | -- |
| 190.77 | 0.647 | 5.81 | -0.207 | 2.61 | -- | -- | -- | 0.718 | 21.3 | -- | -- | -- | -- |
| 453.57 | 0.992 | 5.78 | -0.657 | -- | 2.16 | -- | -- | 0.493 | -- | 24.3 | 680 | -- | -- |
| 185.92 | 0.635 | 5.8 | -- | 2.49 | 0.578 | -- | -- | 0.718 | 21.6 | 25.53 | 326 | -- | -- |
| 585.94 | 1.13 | 5.74 | -0.196 | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
| 191.9 | 0.648 | 5.8 | -- | 2.61 | -- | -- | -- | 0.741 | 21.3 | -- | -- | -- | -- |
| 464.32 | 1 | 5.77 | -- | -- | 2.04 | -- | -- | 0.581 | -- | 24.4 | 677 | -- | -- |
| 586.96 | 1.13 | 5.73 | -- | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.15 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 7 |
| 4 | 169.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 5 | 169.39 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 8 | 169.82 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 10 |
| 13 | 170.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 7 |
| 15 | 170.44 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 16 | 170.46 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 10 |
| 18 | 170.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 32 | 171.32 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 33 | 171.39 | wind | 3.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 48 | 171.82 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 71 | 172.36 | wind | 3.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 89 | 172.74 | temperature | 20.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 117 | 173.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 131 | 173.20 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 12 | 17 |
| 144 | 173.34 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 175 | 173.61 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 182 | 173.65 | temperature | 20.0 | 270 | < th | dose independent | sin | 6 | NA |
| 185 | 173.68 | temperature | 20.0 | 270 | > th | dose independent | sin | 6 | NA |
| 336 | 174.73 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 6 |
| 339 | 174.74 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 343 | 174.78 | temperature | 25.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 359 | 174.86 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 366 | 174.92 | wind | 1.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 369 | 174.92 | wind | 3.0 | 720 | < th | dose dependent | rect. | 10 | 3 |
| 382 | 174.96 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 24 | 12 |
| 383 | 174.97 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 384 | 174.98 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 18 |
| 426 | 175.21 | wind | 3.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 431 | 175.23 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 432 | 175.23 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 447 | 175.31 | wind | 3.0 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 448 | 175.31 | wind | 3.0 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 449 | 175.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 463 | 175.36 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 464 | 175.37 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 471 | 175.40 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 11 | 16 |
| 481 | 175.46 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 498 | 175.51 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 512 | 175.58 | wind | 5.0 | 720 | > th | dose independent | rect. | 24 | 11 |
| 523 | 175.64 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 525 | 175.65 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 10 |
| 541 | 175.68 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 556 | 175.75 | temperature | 25.0 | 90 | > th | dose dependent | sin | 19 | NA |
| 560 | 175.76 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 7 |
| 584 | 175.84 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 590 | 175.86 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 18 |
| 609 | 175.93 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 12 |
| 617 | 175.96 | radiation | 1.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 619 | 175.96 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 632 | 175.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 644 | 176.04 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 721 | 176.30 | temperature | 25.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 727 | 176.32 | wind | 1.0 | 720 | > th | dose independent | rect. | 24 | 1 |
| 741 | 176.35 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 759 | 176.38 | temperature | 25.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 774 | 176.43 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 781 | 176.45 | temperature | 20.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 811 | 176.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 18 |
| 813 | 176.50 | temperature | 20.0 | 270 | < th | dose independent | rect. | 5 | 1 |
| 834 | 176.54 | radiation | 20.0 | 270 | > th | dose independent | rect. | 12 | 3 |
| 856 | 176.58 | radiation | 20.0 | 30 | < th | dose independent | rect. | 11 | 16 |
| 859 | 176.59 | humidity | 80.0 | 720 | > th | dose independent | rect. | 24 | 3 |
| 861 | 176.59 | wind | 9.0 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 960 | 176.77 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 966 | 176.78 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 3 | 3 |