Os03g0123300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cell cycle switch protein.
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Os03g0123300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cell cycle switch protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.78 | 0.252 | 9.66 | 0.0665 | 0.701 | -0.562 | 0.616 | -0.531 | 0.32 | 23.6 | 79.14 | 3946 | -- | -- |
| 29.03 | 0.251 | 9.66 | 0.114 | 0.699 | -0.589 | 0.567 | -- | 0.341 | 23.6 | 79.87 | 3940 | -- | -- |
| 30.28 | 0.258 | 9.7 | 0.113 | 0.519 | -0.185 | -- | -0.596 | 0.17 | 22.7 | 79.03 | 3968 | -- | -- |
| 30.35 | 0.257 | 9.66 | 0.0918 | 0.695 | -0.592 | -- | -- | 0.342 | 23.6 | 80.32 | 3945 | -- | -- |
| 43.14 | 0.308 | 9.69 | 0.127 | -- | -0.368 | -- | -0.659 | 0.175 | -- | 79.03 | 3968 | -- | -- |
| 33.02 | 0.269 | 9.7 | 0.138 | 0.659 | -- | 0.523 | -- | 0.169 | 23.7 | -- | -- | -- | -- |
| 34.21 | 0.274 | 9.7 | 0.118 | 0.657 | -- | -- | -- | 0.167 | 23.6 | -- | -- | -- | -- |
| 44.35 | 0.312 | 9.69 | 0.17 | -- | -0.391 | -- | -- | 0.16 | -- | 78.25 | 6002 | -- | -- |
| 30.56 | 0.257 | 9.67 | -- | 0.699 | -0.596 | -- | -- | 0.334 | 23.5 | 80.53 | 3943 | -- | -- |
| 61.35 | 0.366 | 9.69 | 0.136 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 34.57 | 0.275 | 9.7 | -- | 0.659 | -- | -- | -- | 0.154 | 23.6 | -- | -- | -- | -- |
| 45.11 | 0.314 | 9.69 | -- | -- | -0.388 | -- | -- | 0.142 | -- | 78.25 | 6002 | -- | -- |
| 61.84 | 0.367 | 9.69 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.31 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 4 | 27.36 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 5 | 27.41 | temperature | 25.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 11 | 27.49 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 10 |
| 15 | 27.51 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 42 | 27.70 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 48 | 27.78 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 50 | 27.79 | humidity | 80.0 | 90 | < th | dose independent | rect. | 19 | 22 |
| 75 | 27.96 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 130 | 28.19 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 137 | 28.20 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 143 | 28.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 144 | 28.23 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 159 | 28.29 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 173 | 28.35 | humidity | 80.0 | 90 | > th | dose independent | sin | 6 | NA |
| 194 | 28.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 197 | 28.42 | temperature | 25.0 | 720 | < th | dose independent | rect. | 9 | 2 |
| 198 | 28.42 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 201 | 28.43 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 8 |
| 206 | 28.46 | humidity | 80.0 | 10 | < th | dose independent | rect. | 20 | 22 |
| 221 | 28.50 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 231 | 28.53 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 18 |
| 267 | 28.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 273 | 28.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 286 | 28.61 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 289 | 28.61 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 293 | 28.63 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 294 | 28.63 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 20 |
| 310 | 28.65 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 18 |
| 319 | 28.67 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 15 |
| 343 | 28.72 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 347 | 28.72 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 358 | 28.74 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 367 | 28.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 390 | 28.77 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 405 | 28.78 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 409 | 28.79 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 15 |
| 432 | 28.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 433 | 28.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 436 | 28.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 446 | 28.83 | humidity | 80.0 | 90 | < th | dose independent | sin | 6 | NA |
| 457 | 28.84 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 494 | 28.89 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 496 | 28.89 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 497 | 28.89 | wind | 5.0 | 4320 | > th | dose independent | rect. | 14 | 15 |
| 509 | 28.90 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 515 | 28.90 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 9 | 22 |
| 518 | 28.90 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 523 | 28.91 | wind | 5.0 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 524 | 28.91 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 22 |
| 531 | 28.91 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 15 |
| 535 | 28.92 | wind | 5.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 536 | 28.92 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 586 | 28.95 | wind | 5.0 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 604 | 28.96 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 607 | 28.96 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 622 | 28.96 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 628 | 28.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 651 | 28.98 | humidity | 70.0 | 4320 | > th | dose dependent | sin | 6 | NA |
| 652 | 28.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 661 | 28.99 | wind | 5.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 662 | 28.99 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 697 | 29.00 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 20 |
| 732 | 29.02 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 813 | 29.06 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 22 |
| 851 | 29.08 | wind | 5.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 858 | 29.08 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 859 | 29.09 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 876 | 29.10 | humidity | 80.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 879 | 29.10 | wind | 5.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 901 | 29.11 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 15 |
| 921 | 29.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 925 | 29.12 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 951 | 29.13 | radiation | 40.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 991 | 29.15 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 998 | 29.15 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 13 | 18 |