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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0242300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WD-repeat protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.031) R2 : 0.00261
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0712 (0.0653) R2dN8 : 0.00337 R2N8 : 0.00261
σ : 0.584
deviance : 156.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.99 0.542 2.83 -0.0301 0.0927 9.4 0.152 19.1 0.0826 3.76 68.31 80 8 0.933
170.67 0.608 2.72 0.201 0.244 6.31 0.645 -- 0.319 1.44 69.23 67 8.47 0.445
129.51 0.53 2.84 -0.00976 0.0885 9.6 -- 19.3 0.0565 3.68 67.13 67 8.07 0.817
144.56 0.56 2.81 -0.0682 0.0333 2.72 -- -- 0.0765 0.391 71.55 79 8.1 0.6
129.35 0.53 2.82 0.0213 -- 10.7 -- 21.9 0.0856 -- 66.83 67 8.07 0.833
155.25 0.584 2.81 -0.112 0.124 -- 0.0247 -- 0.0566 6.37 -- -- -- --
155.26 0.583 2.81 -0.112 0.124 -- -- -- 0.0566 6.42 -- -- -- --
144.64 0.56 2.81 -0.0708 -- 2.62 -- -- 0.0819 -- 71.66 79 8.12 0.591
144.68 0.56 2.81 -- 0.0407 2.69 -- -- 0.0848 0.486 71.52 79 8.11 0.583
156.06 0.584 2.82 -0.109 -- -- -- -- 0.0592 -- -- -- -- --
155.58 0.583 2.81 -- 0.123 -- -- -- 0.069 6.48 -- -- -- --
144.77 0.56 2.81 -- -- 2.65 -- -- 0.0891 -- 71.53 79 8.12 0.596
156.37 0.584 2.81 -- -- -- -- -- 0.0712 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 139.88 humidity 70.0 90 < th dose dependent rect. 8 1
14 144.08 wind 3.0 10 > th dose independent rect. 3 1
15 144.08 wind 3.0 10 > th dose dependent rect. 3 1
17 144.09 wind 5.0 90 > th dose independent rect. 2 2
20 144.10 wind 5.0 90 > th dose dependent rect. 3 1
102 144.49 wind 7.0 10 > th dose dependent rect. 12 3
119 144.86 wind 1.0 30 > th dose independent rect. 24 1
120 144.86 radiation 40.0 43200 < th dose dependent rect. 1 1
124 144.88 atmosphere 1000.0 30 > th dose independent rect. 24 1
125 144.89 wind 3.0 30 < th dose independent rect. 24 1
126 144.89 humidity 70.0 90 < th dose independent rect. 8 1
127 144.92 humidity 80.0 30 > th dose independent rect. 24 1
130 144.94 atmosphere 1015.0 30 < th dose independent rect. 24 1
131 144.94 wind 9.0 90 > th dose independent rect. 13 2
135 144.95 wind 9.0 10 > th dose independent rect. 13 1
153 144.95 wind 9.0 30 < th dose dependent rect. 24 1
161 144.96 temperature 20.0 30 > th dose independent rect. 24 1
165 144.97 temperature 10.0 30 > th dose independent rect. 24 1
166 144.97 temperature 30.0 30 < th dose independent rect. 24 1
167 144.97 humidity 50.0 30 > th dose independent rect. 24 1
171 144.97 radiation 1.0 30 < th dose independent rect. 24 1
176 144.97 precipitation 0.1 30 < th dose independent rect. 24 1
177 144.97 temperature 10.0 30 > th dose independent rect. 1 23
178 144.97 radiation 1.0 30 < th dose dependent rect. 24 1
183 144.97 precipitation 0.1 30 < th dose dependent rect. 24 1
184 145.00 temperature 10.0 30 > th dose dependent rect. 24 1
189 145.05 humidity 50.0 30 > th dose dependent rect. 24 1
203 145.20 atmosphere 995.0 30 > th dose dependent rect. 24 1
206 145.27 temperature 10.0 1440 > th dose independent rect. 1 1
209 145.27 temperature 30.0 1440 < th dose independent rect. 1 1
213 145.27 humidity 50.0 1440 > th dose independent rect. 1 1
223 145.27 atmosphere 995.0 1440 > th dose independent rect. 1 1
224 145.27 radiation 1.0 1440 < th dose independent rect. 1 1
244 145.27 temperature 10.0 1440 > th dose independent rect. 2 23
247 145.27 radiation 1.0 1440 < th dose dependent rect. 1 1
256 145.33 atmosphere 1015.0 30 < th dose dependent rect. 24 1
263 145.44 humidity 90.0 30 < th dose independent rect. 24 1
277 145.75 humidity 90.0 30 < th dose dependent rect. 24 1
287 145.91 wind 1.0 270 < th dose dependent rect. 5 2
297 146.16 humidity 80.0 30 < th dose dependent rect. 19 1
300 146.19 temperature 30.0 30 < th dose dependent rect. 24 1
303 146.23 wind 9.0 1440 < th dose independent rect. 1 1
316 146.57 wind 9.0 14400 < th dose independent rect. 1 1
324 146.59 wind 1.0 30 > th dose dependent rect. 24 1
337 146.75 wind 7.0 10 > th dose independent rect. 21 8
347 146.75 wind 7.0 10 > th dose dependent rect. 21 8
418 146.95 humidity 80.0 30 < th dose dependent rect. 19 11
422 146.96 humidity 80.0 30 < th dose dependent rect. 19 9
430 147.01 wind 1.0 720 < th dose independent rect. 5 2
482 147.43 wind 9.0 30 < th dose independent rect. 1 23
486 147.51 radiation 30.0 10 > th dose independent rect. 13 1
489 147.61 wind 1.0 720 < th dose dependent rect. 3 4
490 147.62 precipitation 0.1 90 > th dose independent rect. 2 2
491 147.62 precipitation 0.1 30 > th dose dependent rect. 3 1
516 147.84 wind 1.0 720 < th dose independent rect. 2 5
529 148.01 radiation 30.0 90 > th dose independent rect. 8 1
548 148.17 humidity 70.0 10 < th dose independent rect. 9 1
573 148.35 radiation 30.0 10 > th dose independent rect. 9 1
574 148.35 wind 1.0 720 > th dose independent rect. 1 7
588 148.51 wind 1.0 720 < th dose dependent rect. 3 1
649 148.96 wind 1.0 720 < th dose independent rect. 2 14
664 149.01 wind 1.0 720 < th dose independent rect. 2 11
665 149.03 wind 1.0 720 < th dose independent rect. 2 18
667 149.04 radiation 20.0 10 > th dose dependent rect. 13 1
670 149.09 precipitation 0.1 30 > th dose independent rect. 3 5
691 149.09 atmosphere 995.0 30 > th dose independent rect. 1 23
693 149.09 precipitation 0.1 30 > th dose dependent rect. 3 5
728 149.14 wind 7.0 10 < th dose independent rect. 20 23
739 149.27 radiation 1.0 90 < th dose independent rect. 14 1
740 149.27 radiation 1.0 90 < th dose dependent rect. 14 1
742 149.28 wind 7.0 10 > th dose independent rect. 12 5
749 149.35 wind 1.0 720 > th dose independent rect. 3 10
751 149.35 wind 1.0 720 < th dose dependent rect. 3 14
758 149.38 radiation 10.0 270 > th dose independent rect. 6 1
853 149.56 radiation 40.0 30 > th dose dependent rect. 13 1
859 149.57 wind 1.0 720 > th dose independent rect. 1 14
891 149.61 wind 1.0 720 > th dose independent rect. 3 16
901 149.66 wind 1.0 720 > th dose independent rect. 1 12
909 149.70 wind 1.0 720 < th dose independent sin 4 NA
918 149.72 wind 1.0 720 < th dose dependent rect. 5 13
926 149.75 wind 1.0 720 > th dose independent rect. 1 18
928 149.75 wind 1.0 720 < th dose dependent rect. 5 15
933 149.77 wind 1.0 720 < th dose independent rect. 5 8
952 149.88 wind 1.0 720 > th dose independent rect. 1 21
957 149.90 wind 1.0 720 < th dose independent rect. 5 11
973 149.94 temperature 20.0 30 > th dose dependent rect. 24 10
992 149.97 radiation 30.0 10 > th dose independent rect. 13 22
994 149.98 humidity 70.0 720 < th dose independent rect. 8 1
997 149.99 wind 1.0 720 > th dose independent rect. 5 8