BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0594500 Os04g0594500|AK106269
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0594500 Protein of unknown function DUF674 family protein 765 0.0
Os04g0594600 259 3e-69
Os01g0153500 Protein of unknown function DUF674 family protein 117 1e-26
Os01g0154100 107 1e-23
Os01g0153900 106 3e-23
Os01g0154300 Conserved hypothetical protein 96 3e-20
Os05g0115600 Protein of unknown function DUF674 family protein 86 7e-17
Os01g0154200 82 8e-16
Os01g0154600 Conserved hypothetical protein 70 2e-12
>Os04g0594500 Protein of unknown function DUF674 family protein
Length = 403
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/403 (93%), Positives = 378/403 (93%)
Query: 1 MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC 60
MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC
Sbjct: 1 MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC 60
Query: 61 LDELYKSVEDLSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSAVYVCRDANCS 120
LDELYKSVEDLSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSAVYVCRDANCS
Sbjct: 61 LDELYKSVEDLSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSAVYVCRDANCS 120
Query: 121 ANGDCGVTSVAGSVCKCGKVMEYIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVA 180
ANGDCGVTSVAGSVCKCGKVMEYIGEWPQ VFVKGCYKFIVTDDLHVA
Sbjct: 121 ANGDCGVTSVAGSVCKCGKVMEYIGEWPQDGGSTAAAGSDGGVFVKGCYKFIVTDDLHVA 180
Query: 181 PASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYFDVPNPND 240
PASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYFDVPNPND
Sbjct: 181 PASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYFDVPNPND 240
Query: 241 EANLYVLPESLYSEQDAEVDHKLNNMKIKVLQRKNNTSLLYAEVGEDFVDLLFGLLSIPL 300
EANLYVLPESLYSEQDAEVDHKLNNMKIKVLQRKNNTSLLYAEVGEDFVDLLFGLLSIPL
Sbjct: 241 EANLYVLPESLYSEQDAEVDHKLNNMKIKVLQRKNNTSLLYAEVGEDFVDLLFGLLSIPL 300
Query: 301 GSILKTYVPSGGSHKGEGYVKPGVQKFMVTDDLHILPLSLTSTLQVVSESKVQAKDLVEK 360
GSILKTYVPSGGSHKGEGYVKPGVQKFMVTDDLHILPLSLTSTLQVVSESKVQAKDLVEK
Sbjct: 301 GSILKTYVPSGGSHKGEGYVKPGVQKFMVTDDLHILPLSLTSTLQVVSESKVQAKDLVEK 360
Query: 361 EFTLTKIQVMELLRAVLVTRNTLSSVXXXXXXXXXXXXQSSLY 403
EFTLTKIQVMELLRAVLVTRNTLSSV QSSLY
Sbjct: 361 EFTLTKIQVMELLRAVLVTRNTLSSVLLPPKKKKRLHLQSSLY 403
>Os04g0594600
Length = 360
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 174/420 (41%), Positives = 224/420 (53%), Gaps = 100/420 (23%)
Query: 1 MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC 60
M+ + GPT+AVKL++DKE+ +VLFAESDK+FVDVLF FLTLPLGT+VRLLG+QSQ+GC
Sbjct: 1 MSTSNNGGPTVAVKLYIDKEKKKVLFAESDKEFVDVLFSFLTLPLGTIVRLLGKQSQIGC 60
Query: 61 LDELYKSVEDLSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSAVYVCRDANCS 120
LDELYKSVE LS DYF TKACKAML++P N A C LKVKVDDT++ +YVC ++C
Sbjct: 61 LDELYKSVEALSEDYFQTKACKAMLLRPRNAAGSHCDRLKVKVDDTNERLIYVCPTSSCD 120
Query: 121 ANGDCGVTSVAGSVCKCGKVMEYIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVA 180
A +S G VC V + + VFVK KFI+ DDLHVA
Sbjct: 121 ARS---FSSFWG-VCNSCTVTTTLILREKPVDCRTVESNDDGVFVKSDLKFIIFDDLHVA 176
Query: 181 PASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYFDVPNPND 240
PASTS M + K+G+ + N+E+K+L+LN+
Sbjct: 177 PASTSTMFPLLGKFGLLEQRNIEEKVLELNS----------------------------- 207
Query: 241 EANLYVLPESLYSEQDAEVDHKLNNMKIKVLQRKNNTSLLYAEVGEDFVDLLFGLLSIPL 300
HK+ N+ L+R A VG DFVDL+FGLLS+PL
Sbjct: 208 --------------------HKIINL----LKR--------ALVGYDFVDLVFGLLSLPL 235
Query: 301 GSILKTY--VPSGGSH-----------KGEGYVKPGVQKFMVTDDLHIL----------- 336
GS +K Y V SGGS G G VK Q +++ L
Sbjct: 236 GSTIKAYGQVTSGGSSGLDNLYRSINGSGIGCVKQECQSLLLSPMLAPFFGCGSSVLLQV 295
Query: 337 ---PLSLTSTLQVVSESKVQAKDLVEKEFTLTKIQVME-------LLRAVLVTRNTLSSV 386
P+ + +L+V+ +K+ + LV+KE TL + QV LLRA LVTRN LSSV
Sbjct: 296 QESPIK-SCSLRVIRAAKIPNEMLVKKELTLDRTQVFHLLLQVLKLLRAALVTRNALSSV 354
>Os01g0153500 Protein of unknown function DUF674 family protein
Length = 243
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 113/232 (48%), Gaps = 13/232 (5%)
Query: 11 IAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGCLDELYKSVED 70
+++KL VD RVLFAE+ KD VD LF L LP+GT V+LLG+ S VGC+ LY SVE
Sbjct: 8 LSMKLLVDTNAQRVLFAEASKDVVDFLFSLLALPVGTAVKLLGKDSMVGCVGNLYASVEK 67
Query: 71 LSADYFHTKACKAMLMKP---HNTAAEQCCLLKVKVDDTDQS-AVYVCRDANCSANGDCG 126
L Y A K L+ P A+ +L++ + Q + + CR +C
Sbjct: 68 LDGTYVQPGASKNALLSPVVLSPAASSNTSVLRLPAPSSSQPKSFFSCRSYDCFYY---- 123
Query: 127 VTSVAGSVC-KCGKVM----EYIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVAP 181
VT V+G C CG M Y FV+G + V DDL V+P
Sbjct: 124 VTDVSGVKCPSCGNQMTTACTYAAPTAAQKLQAAAAEGAGKGFVQGIVTYTVMDDLTVSP 183
Query: 182 ASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYF 233
S+ +++ + + V+D L+++ +QL + +L+ SL SK L+ +
Sbjct: 184 MSSISSITLLNTFAVKDLGALKEQTVQLGYTEGLAILRASLQSKTVLSDVFL 235
>Os01g0154100
Length = 254
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 116/253 (45%), Gaps = 25/253 (9%)
Query: 1 MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC 60
MA +++KL VD + RVL+AE+ KD VD LF LTLP+GTVV++L + S VG
Sbjct: 1 MATETTSSKALSMKLLVDSKAQRVLYAEAGKDVVDFLFSLLTLPVGTVVKVLSKDSMVGS 60
Query: 61 LDELYKSVEDLSADYFHTKACKAMLMKPHN------------TAAEQCC-LLKVKVDDTD 107
+ ELY SVEDL A Y + + +L+ P TAA L + D +
Sbjct: 61 IGELYASVEDLDATYVRSADARNVLLAPAGGFDTGKLLQLPETAAPLATKLYRCSSCDYN 120
Query: 108 QSAVYV-------CRDANCSANGDCGVTSVAGSVCKCGKVMEYIGEWPQXXXXXXXXXXX 160
+ YV C+ A C + V S GE Q
Sbjct: 121 ECYDYVSTVSGLRCQIARCPGKMTVAMKLVVSSTSTTATGSASGGEAAQPAYAVAGTG-- 178
Query: 161 XXVFVKGCYKFIVTDDLHVAPASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKR 220
FV+G + + DDL VAP ST +++ +GV D +L++K +Q+ + +LK
Sbjct: 179 ---FVQGVVTYTIMDDLRVAPMSTISGITLLTTFGVTDITSLQEKTVQIGYTEGLAMLKA 235
Query: 221 SLTSKQTLTGYYF 233
SL SK LT +
Sbjct: 236 SLQSKTVLTDVFL 248
>Os01g0153900
Length = 252
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 9/232 (3%)
Query: 11 IAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGCLDELYKSVED 70
+++ L +D + RVL+AE+ KD VD L L LP+ + ++LLG+ S VGC+ LY S E
Sbjct: 15 MSMTLLIDTKAQRVLYAEARKDVVDFLLSLLALPIASGIKLLGKGSMVGCVGNLYASFEK 74
Query: 71 LSADYFHTKACKAMLMKP---HNTAAEQCCLLKVKVDDTDQSAVYVCRDANCSANGDCGV 127
L + K L+ P A+ +L++ + QS+ R + S V
Sbjct: 75 LDDAFVQADTAKDSLLSPVVLSPAASSNTSVLRLPAPSSAQSSKSFFRCSYSSNACRSFV 134
Query: 128 TSVAGSVC-KCGKVME----YI-GEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVAP 181
T+ +G+ C CG M Y+ G Q FV+G + V DDL VAP
Sbjct: 135 TNASGTKCPNCGNQMATACTYVAGGQDQNTQNAAAEGAKGGGFVQGIVTYTVMDDLTVAP 194
Query: 182 ASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYF 233
S+ +++ +++ V+D L++K +QL + +LK SL SK LT +
Sbjct: 195 MSSISSITLLNRFAVKDLGALKEKTVQLGYTEGLAILKASLQSKTVLTDVFI 246
>Os01g0154300 Conserved hypothetical protein
Length = 251
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 21/231 (9%)
Query: 11 IAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGCLDELYKSVED 70
+++KL +D + +V FAE+ DFV+ L L LP+ ++ LL ++ VG + ++ SVE
Sbjct: 6 LSIKLVIDTKAHKVCFAEAGSDFVEFLSSLLCLPVSNIINLLTKEHMVGSIANVFDSVEK 65
Query: 71 LSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVD---DTDQSAVYVCRDANCSANG---D 124
L AD+ + K +KP A C L+ +D DTD S + C +G
Sbjct: 66 LDADHVISNESKEPYLKPM-VAPGALCPLQQLIDAQLDTDTS-FFTCEGKLNHYHGIRVA 123
Query: 125 CG-VTSVAGSVC-KCGKVMEYIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVAPA 182
CG T + GS+C KCG ME FV G ++ V DDL + PA
Sbjct: 124 CGYFTVMKGSICPKCGYAME-----------KAMAHVKATGFVVGTARYTVKDDLSIVPA 172
Query: 183 STSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYF 233
S+ +S+ + GV+D + L+++ +++ E+ +L SL +K LT +
Sbjct: 173 SSVSTISLLAQCGVKDLSTLQERTVKIGKEEALEILLASLRTKTVLTDVFL 223
>Os05g0115600 Protein of unknown function DUF674 family protein
Length = 243
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 10/233 (4%)
Query: 11 IAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGCLDELYKSVED 70
I++KL VD + +VLFAE+ K+FVD +F LTLP+G VV+L+ + G + LY+SVE
Sbjct: 7 ISLKLLVDSKSKKVLFAEAGKEFVDFVFSLLTLPVGAVVKLISAGTMQGSIGRLYQSVEH 66
Query: 71 LSADYFHTKACKAMLMKPH--NTAAEQCCLLKVKVDDTDQSAVYVCRDANCSANGDCGVT 128
++A Y +A L++P + A + LL+ + S + + C+ +
Sbjct: 67 INASYLLPNKDRADLLQPKVLHPDARELLLLQPESGGAGGSPLARFKLYTCAGHCTTAAM 126
Query: 129 SVAGSVCKCGKVME--------YIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVA 180
+ +C + M+ Q +VKG ++VTD L V
Sbjct: 127 EAKAACPQCKQAMDTEVALVLPSASSPAQSSAAASGGDGESSGYVKGLVTYMVTDGLEVT 186
Query: 181 PASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYF 233
P S +++ +K+ V L +K + + ++ +LK +L S L+ +
Sbjct: 187 PMSAISSITLINKFSVGKDVELAEKYVSIAMDEGLGILKAALRSDTVLSDVFL 239
>Os01g0154200
Length = 259
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 104/249 (41%), Gaps = 20/249 (8%)
Query: 1 MAETKIEGPTIAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGC 60
MA + T+ +KL VD + RVL+AE KD VD L L +PL V +LL VG
Sbjct: 1 MAGKTSKAATLTMKLLVDTKAQRVLYAEGSKDVVDFLLSLLAVPLAGVTKLLTAGDMVGS 60
Query: 61 LDELYKSVED-LSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDDTDQSAVYVCRDANC 119
+ LY SV D L ADY AC+ + L D A+Y C C
Sbjct: 61 VGNLYGSVVDKLGADY----ACRGDVKAALLAPTAALRLGSPADADNGGGALYRCSGCAC 116
Query: 120 SANGDCGVTSVAGSVCK-CGKVM----------EYIGEWPQXXXXXXX----XXXXXXVF 164
S + VT V G+ C C + M + G + +
Sbjct: 117 SRSCYNFVTKVNGTPCPVCKRKMATEVSLVEPDDVSGAGAKVVTSPAAPSGEASSSKAGY 176
Query: 165 VKGCYKFIVTDDLHVAPASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTS 224
G + V DDL VAP+ST ++ GV D L++K +++ ++ +LK SL S
Sbjct: 177 APGKVTYTVMDDLTVAPSSTVSAVAALVALGVTDIRGLQEKTVEVGYDEGLAVLKASLQS 236
Query: 225 KQTLTGYYF 233
K LT +
Sbjct: 237 KTVLTDVFL 245
>Os01g0154600 Conserved hypothetical protein
Length = 241
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 20/232 (8%)
Query: 11 IAVKLFVDKERSRVLFAESDKDFVDVLFGFLTLPLGTVVRLLGRQSQVGCLDELYKSVED 70
+++KL +D + +V FAE+ D ++ + L LP+ T++ +L ++ VG + + SVE
Sbjct: 6 LSMKLLIDTKAQKVCFAEAGSDVIEFISCLLCLPMSTIINMLTKERMVGSMGNVLDSVEK 65
Query: 71 LSADYFHTKACKAMLMKPHNTAAEQCCLLKVKVDD--TDQSAVYVCRDANC-----SANG 123
L + Y + K + P C L ++ +D ++ + C + +
Sbjct: 66 LDSKYVISSQSKERFLSPTVAPTVLCPLQQLLLDAKLNVNASFFTCEGKSTVVSYSTTKV 125
Query: 124 DCGVTSVA-GSVCK-CGKVMEYIGEWPQXXXXXXXXXXXXXVFVKGCYKFIVTDDLHVAP 181
CG SV+ G+VC C M P FV G + V DDL + P
Sbjct: 126 PCGYFSVSKGAVCPVCSTQMHR--AIPHVKTVG---------FVVGTATYTVRDDLSMTP 174
Query: 182 ASTSLMMSIFDKYGVRDPANLEQKILQLNAEKITCLLKRSLTSKQTLTGYYF 233
AS+ +S+ + GV+D + L+++ +++ E++ +L SL SK LT +
Sbjct: 175 ASSVSSVSLLAQCGVKDLSALQERTVKIGKEEVLEILLASLKSKTVLTDVFL 226
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,480,673
Number of extensions: 439888
Number of successful extensions: 998
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 10
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)