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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0115600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF674 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0217) R2 : 0.000921
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0297 (0.0458) R2dN8 : 0.00119 R2N8 : 0.000921
σ : 0.409
deviance : 76.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.1 0.402 3.1 -0.0638 0.117 -0.295 -0.222 0.881 0.0173 4.94 1.065 16 -- --
73.43 0.402 3.09 -0.024 0.125 -0.216 -0.332 -- 0.0277 5.01 1.065 16 -- --
72.82 0.4 3.1 -0.0678 0.116 -0.28 -- 0.894 0.0197 4.63 1.05 16 -- --
73.7 0.402 3.09 -0.0228 0.125 -0.208 -- -- 0.0291 4.65 1.073 16 -- --
73.43 0.401 3.1 -0.0723 -- -0.336 -- 0.947 0.0226 -- 1.05 16 -- --
74.88 0.406 3.09 -0.00128 0.19 -- -0.266 -- 0.0242 4.69 -- -- -- --
75.06 0.406 3.09 -4.85e-05 0.188 -- -- -- 0.0255 4.49 -- -- -- --
74.42 0.404 3.09 -0.0247 -- -0.264 -- -- 0.0329 -- 1.05 16 -- --
73.71 0.402 3.09 -- 0.126 -0.206 -- -- 0.0316 4.65 1.068 16 -- --
76.95 0.41 3.09 0.00727 -- -- -- -- 0.0305 -- -- -- -- --
75.06 0.405 3.09 -- 0.188 -- -- -- 0.0255 4.49 -- -- -- --
74.44 0.403 3.09 -- -- -0.262 -- -- 0.0356 -- 1.05 16 -- --
76.95 0.409 3.09 -- -- -- -- -- 0.0297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.57 precipitation 0.1 90 > th dose independent rect. 5 1
2 66.57 precipitation 0.1 90 > th dose dependent rect. 5 1
3 66.94 radiation 1.0 43200 < th dose dependent rect. 3 1
4 67.11 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 67.22 temperature 25.0 90 > th dose independent rect. 2 1
6 67.24 temperature 25.0 90 > th dose dependent rect. 2 1
9 67.28 atmosphere 1000.0 30 > th dose independent rect. 3 23
14 67.38 wind 3.0 30 < th dose dependent rect. 2 1
15 67.39 atmosphere 1005.0 30 > th dose independent rect. 2 1
20 67.41 wind 3.0 30 < th dose independent rect. 2 1
35 67.45 humidity 80.0 30 > th dose independent rect. 2 1
39 67.46 temperature 10.0 30 > th dose independent rect. 2 1
41 67.46 temperature 30.0 30 < th dose independent rect. 2 1
42 67.46 humidity 50.0 30 > th dose independent rect. 2 1
45 67.46 atmosphere 995.0 30 > th dose independent rect. 2 1
46 67.46 atmosphere 1010.0 30 < th dose independent rect. 2 1
48 67.46 radiation 1.0 30 < th dose independent rect. 2 1
53 67.46 precipitation 0.1 30 < th dose independent rect. 2 1
54 67.46 temperature 10.0 30 > th dose independent rect. 3 23
55 67.46 humidity 50.0 30 > th dose dependent rect. 2 1
59 67.46 radiation 1.0 30 < th dose dependent rect. 2 1
64 67.46 precipitation 0.1 30 < th dose dependent rect. 2 1
65 67.47 wind 9.0 1440 < th dose independent rect. 3 1
66 67.47 temperature 10.0 1440 > th dose independent rect. 3 1
69 67.47 temperature 30.0 1440 < th dose independent rect. 3 1
73 67.47 humidity 50.0 1440 > th dose independent rect. 3 1
83 67.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 67.47 radiation 1.0 1440 < th dose independent rect. 3 1
104 67.47 temperature 10.0 1440 > th dose independent rect. 4 23
107 67.47 radiation 1.0 1440 < th dose dependent rect. 3 1
123 67.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
126 67.60 temperature 30.0 30 < th dose dependent rect. 2 1
128 67.66 wind 1.0 30 > th dose independent rect. 2 1
143 67.80 precipitation 0.1 30 < th dose independent rect. 3 23
144 67.80 precipitation 0.1 30 < th dose dependent rect. 3 23
181 68.20 wind 9.0 30 < th dose independent rect. 3 23
193 68.74 humidity 50.0 30 > th dose independent rect. 3 23
216 70.19 wind 3.0 10 > th dose independent rect. 6 1
217 70.23 humidity 90.0 90 < th dose independent rect. 2 1
249 70.47 wind 1.0 10 > th dose independent rect. 8 23
261 70.76 temperature 30.0 30 < th dose independent rect. 3 23
264 70.91 humidity 90.0 90 < th dose independent rect. 1 7
268 71.01 radiation 1.0 270 > th dose independent rect. 4 1
279 71.01 radiation 1.0 270 > th dose dependent rect. 4 1
290 71.04 radiation 10.0 30 < th dose dependent rect. 3 23
297 71.16 atmosphere 1015.0 30 < th dose independent rect. 3 23
298 71.18 humidity 90.0 30 < th dose independent rect. 7 1
307 71.30 precipitation 0.1 270 > th dose independent rect. 1 5
316 71.37 precipitation 0.1 270 > th dose dependent rect. 1 5
317 71.38 atmosphere 1005.0 30 > th dose independent rect. 7 1
325 71.41 wind 1.0 90 < th dose dependent rect. 5 1
326 71.41 radiation 1.0 10 > th dose dependent rect. 7 1
331 71.44 temperature 25.0 270 > th dose independent rect. 23 4
340 71.47 temperature 25.0 10 < th dose independent rect. 7 1
353 71.49 precipitation 0.1 10 > th dose independent rect. 19 1
363 71.49 precipitation 0.1 10 > th dose dependent rect. 19 1
379 71.53 radiation 10.0 10 > th dose independent rect. 7 1
383 71.54 atmosphere 1000.0 30 > th dose dependent rect. 7 1
409 71.60 radiation 10.0 30 < th dose independent rect. 3 23
416 71.65 wind 1.0 10 < th dose independent rect. 11 16
423 71.67 radiation 10.0 10 > th dose independent rect. 16 16
453 71.74 wind 1.0 10 < th dose independent rect. 14 13
457 71.75 wind 1.0 10 < th dose independent rect. 17 10
482 71.79 temperature 25.0 10 < th dose independent rect. 2 7
490 71.80 wind 5.0 270 > th dose dependent rect. 3 4
496 71.82 wind 5.0 270 > th dose dependent rect. 3 1
520 71.89 wind 5.0 270 > th dose independent rect. 3 4
525 71.91 wind 1.0 10 < th dose independent rect. 7 20
537 71.96 wind 5.0 30 < th dose independent rect. 7 1
539 71.96 wind 7.0 30 > th dose dependent rect. 19 1
587 71.99 wind 5.0 270 > th dose independent rect. 3 1
595 72.00 radiation 10.0 10 > th dose dependent rect. 16 16
619 72.05 temperature 10.0 30 > th dose dependent rect. 3 23
662 72.12 temperature 30.0 30 < th dose dependent rect. 7 1
670 72.14 wind 9.0 30 < th dose dependent rect. 3 23
678 72.17 precipitation 0.1 270 > th dose dependent sin 6 NA
683 72.18 humidity 90.0 10 < th dose dependent rect. 7 1
685 72.19 wind 1.0 10 > th dose independent rect. 21 10
687 72.20 temperature 20.0 30 > th dose independent rect. 7 1
690 72.21 atmosphere 1000.0 720 > th dose independent rect. 3 8
693 72.23 precipitation 0.1 270 > th dose independent sin 6 NA
695 72.23 atmosphere 995.0 30 > th dose independent rect. 8 23
700 72.26 wind 9.0 1440 < th dose independent rect. 8 1
703 72.26 temperature 10.0 1440 > th dose independent rect. 8 1
708 72.26 humidity 50.0 1440 > th dose independent rect. 8 1
710 72.26 atmosphere 995.0 1440 > th dose independent rect. 8 1
713 72.26 atmosphere 1015.0 1440 < th dose independent rect. 8 1
715 72.26 precipitation 0.1 720 < th dose independent rect. 3 8
717 72.26 temperature 10.0 1440 > th dose independent rect. 9 23
720 72.26 precipitation 0.1 720 < th dose dependent rect. 3 8
731 72.28 temperature 10.0 30 > th dose independent rect. 7 1
734 72.28 humidity 50.0 30 > th dose independent rect. 7 1
736 72.28 atmosphere 995.0 30 > th dose independent rect. 7 1
737 72.28 atmosphere 1010.0 30 < th dose independent rect. 7 1
739 72.28 precipitation 0.1 30 < th dose independent rect. 7 1
741 72.28 temperature 10.0 30 > th dose independent rect. 8 23
742 72.28 wind 9.0 10 < th dose dependent rect. 7 1
743 72.28 precipitation 0.1 30 < th dose dependent rect. 7 1
746 72.30 humidity 90.0 90 < th dose dependent rect. 2 6
751 72.31 temperature 25.0 10 > th dose independent rect. 22 13
779 72.34 atmosphere 995.0 720 > th dose independent rect. 23 16
790 72.36 precipitation 0.1 1440 < th dose independent rect. 8 1
791 72.36 temperature 10.0 720 > th dose independent rect. 15 8
792 72.36 temperature 10.0 720 > th dose independent rect. 23 16
793 72.36 humidity 50.0 30 > th dose independent rect. 8 23
794 72.36 precipitation 0.1 1440 < th dose dependent rect. 8 1
796 72.37 wind 9.0 30 < th dose independent rect. 8 23
800 72.38 precipitation 0.1 720 < th dose independent rect. 15 8
803 72.38 precipitation 0.1 720 < th dose dependent rect. 15 8
805 72.39 precipitation 0.1 720 < th dose independent rect. 23 16
806 72.39 precipitation 0.1 30 < th dose independent rect. 8 23
809 72.39 precipitation 0.1 720 < th dose dependent rect. 23 16
810 72.39 precipitation 0.1 30 < th dose dependent rect. 8 23
817 72.42 radiation 40.0 30 < th dose independent rect. 7 1
819 72.43 radiation 20.0 10 < th dose independent sin 11 NA
823 72.43 precipitation 0.1 720 < th dose independent rect. 15 17
827 72.43 precipitation 0.1 720 < th dose dependent rect. 15 17
839 72.45 humidity 50.0 720 > th dose independent rect. 3 8
840 72.45 atmosphere 995.0 720 > th dose independent rect. 15 8
867 72.48 wind 1.0 10 > th dose independent rect. 17 14
868 72.48 atmosphere 995.0 30 > th dose dependent rect. 3 23
869 72.49 temperature 10.0 720 > th dose independent rect. 3 8
872 72.49 temperature 10.0 720 > th dose independent rect. 11 16
881 72.51 atmosphere 1005.0 30 > th dose dependent rect. 2 6
915 72.54 wind 9.0 720 < th dose independent rect. 20 7
916 72.54 atmosphere 995.0 720 > th dose independent rect. 3 17
924 72.56 wind 1.0 10 > th dose independent sin 16 NA
929 72.57 atmosphere 995.0 720 > th dose independent rect. 8 7
930 72.57 atmosphere 995.0 720 > th dose independent rect. 11 16
939 72.59 atmosphere 995.0 720 > th dose independent rect. 15 17
950 72.60 temperature 25.0 10 < th dose independent rect. 22 11
967 72.62 temperature 10.0 30 > th dose dependent rect. 7 1
971 72.63 temperature 10.0 720 > th dose independent rect. 8 7
972 72.63 atmosphere 1015.0 720 < th dose independent rect. 8 7
973 72.63 temperature 10.0 720 > th dose independent rect. 15 17
978 72.63 humidity 50.0 30 > th dose dependent rect. 3 23
980 72.64 temperature 10.0 720 > th dose independent rect. 20 7
981 72.64 temperature 30.0 720 < th dose independent rect. 20 7
982 72.64 humidity 50.0 720 > th dose independent rect. 20 7
985 72.64 atmosphere 995.0 720 > th dose independent rect. 20 7
986 72.64 radiation 1.0 720 < th dose independent rect. 20 7
991 72.64 wind 9.0 720 < th dose independent rect. 3 8
993 72.64 temperature 10.0 720 > th dose independent rect. 3 17