Os01g0154300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0154300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.84 | 0.378 | 3.25 | 0.301 | 0.18 | -0.193 | 0.126 | -1.38 | -0.0314 | 8.43 | 78 | 5852 | -- | -- |
| 67.15 | 0.382 | 3.24 | 0.157 | 0.181 | -0.236 | 0.132 | -- | -0.0844 | 8.78 | 84 | 6966 | -- | -- |
| 64.89 | 0.375 | 3.25 | 0.303 | 0.181 | -0.194 | -- | -1.37 | -0.0329 | 8.34 | 78 | 5825 | -- | -- |
| 67.16 | 0.382 | 3.25 | 0.166 | 0.181 | -0.273 | -- | -- | -0.112 | 8.57 | 84.43 | 6964 | -- | -- |
| 66.68 | 0.38 | 3.25 | 0.301 | -- | -0.201 | -- | -1.34 | -0.0371 | -- | 77 | 5776 | -- | -- |
| 68.42 | 0.388 | 3.22 | 0.117 | 0.182 | -- | 0.128 | -- | -0.00166 | 8.32 | -- | -- | -- | -- |
| 68.46 | 0.387 | 3.22 | 0.12 | 0.183 | -- | -- | -- | -0.00186 | 8.2 | -- | -- | -- | -- |
| 69.1 | 0.387 | 3.25 | 0.165 | -- | -0.246 | -- | -- | -0.107 | -- | 84.9 | 7086 | -- | -- |
| 67.84 | 0.384 | 3.25 | -- | 0.188 | -0.233 | -- | -- | -0.116 | 8.39 | 84.85 | 6963 | -- | -- |
| 70.3 | 0.392 | 3.23 | 0.122 | -- | -- | -- | -- | 0.000241 | -- | -- | -- | -- | -- |
| 68.85 | 0.388 | 3.23 | -- | 0.183 | -- | -- | -- | -0.0152 | 8.16 | -- | -- | -- | -- |
| 69.78 | 0.389 | 3.25 | -- | -- | -0.21 | -- | -- | -0.108 | -- | 84.87 | 7259 | -- | -- |
| 70.69 | 0.392 | 3.23 | -- | -- | -- | -- | -- | -0.0132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.71 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 2 | 63.87 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 5 | 64.14 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 9 | 64.36 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 11 | 64.38 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 18 | 64.51 | temperature | 25.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 22 | 64.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 24 | 64.56 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 25 | 64.56 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 28 | 64.56 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 31 | 64.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 32 | 64.56 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 34 | 64.56 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 39 | 64.56 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 1 |
| 41 | 64.56 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 42 | 64.56 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 47 | 64.56 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 48 | 64.56 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 49 | 64.58 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 50 | 64.58 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 54 | 64.59 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 59 | 64.61 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 109 | 64.70 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 3 | 8 |
| 115 | 64.71 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 124 | 64.73 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 129 | 64.75 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 131 | 64.76 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 132 | 64.76 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 133 | 64.77 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 159 | 64.83 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 164 | 64.84 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 169 | 64.86 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 188 | 64.87 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 195 | 64.89 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 200 | 64.90 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 201 | 64.90 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 218 | 64.93 | humidity | 50.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 241 | 64.94 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 265 | 64.97 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 266 | 64.97 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 272 | 64.98 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 283 | 64.99 | humidity | 80.0 | 4320 | < th | dose independent | sin | 4 | NA |
| 382 | 65.06 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 396 | 65.07 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 404 | 65.08 | humidity | 80.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 487 | 65.13 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 583 | 65.18 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 585 | 65.18 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 675 | 65.22 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 688 | 65.23 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 739 | 65.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 805 | 65.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 813 | 65.27 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 819 | 65.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 857 | 65.29 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 924 | 65.30 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 942 | 65.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 943 | 65.31 | temperature | 10.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 959 | 65.31 | temperature | 10.0 | 720 | > th | dose independent | rect. | 23 | 16 |