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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0594500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF674 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0181) R2 : 0.00947
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0798 (0.0382) R2dN8 : 0.0122 R2N8 : 0.00947
σ : 0.342
deviance : 53.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.83 0.328 3.26 0.175 0.177 0.324 -0.0319 0.0433 0.136 8.44 19.6 339 -- --
48.83 0.325 3.26 0.179 0.177 0.315 -0.02 -- 0.137 8.45 19.6 340 -- --
48.83 0.325 3.26 0.175 0.177 0.323 -- 0.0384 0.137 8.5 19.61 340 -- --
48.83 0.325 3.26 0.179 0.177 0.316 -- -- 0.137 8.49 19.61 340 -- --
50.45 0.331 3.26 0.174 -- 0.371 -- 0.145 0.142 -- 19.7 390 -- --
51.24 0.336 3.27 0.074 0.202 -- -0.0265 -- 0.0854 7.86 -- -- -- --
51.24 0.335 3.27 0.0734 0.202 -- -- -- 0.0855 7.91 -- -- -- --
50.51 0.331 3.26 0.192 -- 0.349 -- -- 0.146 -- 19.61 390 -- --
49.61 0.328 3.26 -- 0.188 0.251 -- -- 0.112 8.21 19.9 357 -- --
53.45 0.342 3.27 0.0756 -- -- -- -- 0.0881 -- -- -- -- --
51.38 0.335 3.27 -- 0.202 -- -- -- 0.0773 7.88 -- -- -- --
51.34 0.334 3.27 -- -- 0.268 -- -- 0.122 -- 20.16 530 -- --
53.6 0.342 3.28 -- -- -- -- -- 0.0798 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.59 humidity 80.0 10 < th dose independent rect. 7 1
3 47.64 radiation 10.0 30 > th dose independent rect. 7 1
6 47.70 humidity 80.0 10 < th dose independent rect. 23 9
12 47.95 wind 5.0 14400 < th dose independent rect. 8 9
13 47.96 wind 5.0 14400 < th dose independent rect. 9 7
14 47.97 wind 5.0 14400 > th dose independent rect. 8 9
16 47.98 wind 5.0 14400 > th dose independent rect. 9 7
26 48.05 wind 5.0 14400 > th dose independent rect. 24 17
27 48.05 wind 5.0 14400 < th dose independent rect. 24 17
38 48.08 wind 5.0 14400 > th dose independent rect. 2 15
39 48.08 wind 5.0 14400 < th dose independent rect. 2 15
65 48.18 temperature 20.0 270 < th dose dependent rect. 23 9
79 48.22 wind 5.0 14400 < th dose independent sin 0 NA
88 48.23 wind 5.0 14400 > th dose independent sin 1 NA
148 48.31 wind 5.0 14400 < th dose independent rect. 11 1
159 48.32 wind 3.0 14400 > th dose dependent rect. 9 6
182 48.37 wind 5.0 14400 < th dose independent rect. 10 19
192 48.39 wind 5.0 14400 > th dose independent rect. 10 19
198 48.40 wind 5.0 14400 > th dose independent rect. 11 1
235 48.43 temperature 20.0 270 < th dose dependent sin 9 NA
257 48.45 wind 7.0 14400 < th dose dependent rect. 11 1
263 48.46 temperature 20.0 270 < th dose independent rect. 23 11
282 48.47 wind 7.0 14400 < th dose dependent rect. 10 5
284 48.47 temperature 10.0 30 > th dose dependent rect. 8 23
365 48.52 wind 1.0 14400 > th dose dependent rect. 11 1
369 48.53 temperature 20.0 270 < th dose independent sin 8 NA
392 48.54 wind 7.0 14400 < th dose independent rect. 9 1
411 48.54 wind 5.0 14400 > th dose dependent rect. 23 18
421 48.55 radiation 10.0 10 > th dose independent rect. 16 16
430 48.56 wind 5.0 14400 > th dose independent no NA NA
440 48.56 wind 5.0 14400 > th dose independent rect. 2 23
449 48.57 wind 5.0 14400 < th dose independent no NA NA
502 48.59 temperature 25.0 720 < th dose dependent rect. 13 16
503 48.59 temperature 25.0 720 < th dose dependent rect. 12 18
545 48.62 temperature 25.0 720 < th dose dependent sin 14 NA
551 48.62 temperature 20.0 10 < th dose dependent rect. 24 11
562 48.63 wind 5.0 14400 > th dose independent rect. 14 23
563 48.63 wind 3.0 14400 > th dose dependent sin 0 NA
572 48.64 temperature 20.0 270 > th dose independent sin 8 NA
577 48.64 wind 5.0 14400 < th dose independent rect. 14 23
607 48.66 radiation 1.0 30 > th dose independent rect. 8 23
622 48.67 wind 5.0 14400 > th dose independent rect. 15 1
675 48.70 temperature 20.0 270 > th dose independent rect. 20 11
705 48.71 wind 3.0 43200 < th dose dependent rect. 9 1
725 48.72 temperature 20.0 720 > th dose independent rect. 12 18
771 48.73 wind 3.0 14400 > th dose dependent rect. 9 19
855 48.78 wind 7.0 14400 < th dose independent rect. 6 4
863 48.78 wind 1.0 43200 < th dose dependent rect. 14 1
890 48.79 temperature 10.0 720 > th dose dependent rect. 18 13
905 48.80 wind 5.0 14400 < th dose independent rect. 15 1
906 48.80 humidity 90.0 30 < th dose independent rect. 2 3
941 48.81 precipitation 0.1 14400 > th dose dependent rect. 5 5
945 48.81 temperature 10.0 720 > th dose dependent rect. 19 11
986 48.82 temperature 20.0 270 < th dose dependent rect. 24 23
990 48.83 precipitation 0.1 14400 > th dose independent rect. 5 5
996 48.83 temperature 20.0 720 > th dose independent rect. 3 21