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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0153500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF674 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0403) R2 : 0.575
β1 : 0.736 (0.145) R2dD : 0.0264 R2D : -0.017
β2 : 4.85 (0.214) R2dC : 2.23 R2C : -0.607
β3 : -4.38 (0.27) R2dE : 1.19 R2E : -1.69
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0208 (0.088) R2dN8 : 7.91e-05 R2N8 : -0.0163
σ : 0.719
deviance : 238.02
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_____
C
peak time of C : 7.11
E
wheather : temperature
threshold : 14.8
memory length : 99
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.226
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.87 0.717 3.93 0.727 4.87 -4.47 1.35 0.0984 0.0289 7.2 14.83 100 0.104 --
232.85 0.711 3.93 0.724 4.88 -4.46 1.39 -- 0.0199 7.19 14.8 100 0.131 --
234.54 0.713 3.91 0.901 5.12 -4.54 -- 1.66 0.062 7.02 13.84 105 0.341 --
238.02 0.719 3.93 0.736 4.85 -4.38 -- -- 0.0208 7.11 14.8 99 0.226 --
484.19 1.03 4.19 0.157 -- 1.28 -- 1.48 -0.588 -- 13.84 105 0.341 --
366.74 0.898 4.13 0.12 1.81 -- 1.04 -- -0.498 6.44 -- -- -- --
369.46 0.9 4.14 0.134 1.82 -- -- -- -0.501 6.46 -- -- -- --
376.06 0.903 4.19 0.12 -- 1.84 -- -- -0.53 -- -242.5 822 6.42 --
251.43 0.739 3.97 -- 4.62 -3.98 -- -- -0.0944 7.02 14.82 92 0.249 --
540.83 1.09 4.17 0.18 -- -- -- -- -0.463 -- -- -- -- --
369.93 0.9 4.14 -- 1.82 -- -- -- -0.516 6.45 -- -- -- --
370.54 0.897 4.18 -- -- 1.81 -- -- -0.52 -- -2186 199 1.21 --
541.69 1.09 4.18 -- -- -- -- -- -0.483 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.11 temperature 15 90 > th dose dependent sin 6 NA
3 233.71 temperature 30 270 < th dose dependent rect. 23 11
5 234.82 temperature 30 90 < th dose dependent sin 6 NA
6 235.24 temperature 30 90 < th dose dependent rect. 1 11
58 248.11 temperature 15 270 > th dose dependent rect. 20 14
83 251.29 temperature 25 270 < th dose dependent rect. 23 20
95 252.22 temperature 25 90 < th dose dependent rect. 24 17
377 271.61 temperature 20 270 > th dose independent rect. 20 14
438 275.10 temperature 15 270 > th dose dependent rect. 17 21
461 276.25 temperature 20 270 < th dose independent rect. 23 13
498 277.81 temperature 20 270 < th dose independent rect. 23 20
508 277.99 temperature 25 720 < th dose dependent rect. 23 3
523 278.64 temperature 20 270 > th dose independent sin 7 NA
554 279.58 temperature 20 270 < th dose independent sin 7 NA
565 279.90 temperature 20 270 > th dose independent rect. 3 22
577 280.24 temperature 10 720 > th dose dependent rect. 21 8
587 280.51 temperature 25 720 < th dose dependent rect. 1 1
648 281.92 temperature 20 10 > th dose dependent rect. 23 15
680 282.55 temperature 25 720 < th dose dependent rect. 17 17
690 282.69 temperature 25 720 < th dose dependent rect. 21 7
692 282.76 temperature 20 720 > th dose independent rect. 21 8
699 282.95 temperature 25 720 < th dose dependent rect. 20 9
707 283.07 temperature 20 10 < th dose independent rect. 24 13
766 284.00 temperature 20 270 > th dose independent rect. 17 22
775 284.15 temperature 30 90 < th dose dependent rect. 15 21
808 284.78 temperature 20 720 < th dose independent rect. 23 3
948 286.61 temperature 20 720 < th dose independent rect. 1 1
953 286.74 temperature 30 30 < th dose dependent rect. 9 23
990 287.18 temperature 25 270 < th dose dependent rect. 17 23
1000 287.24 temperature 15 10 > th dose dependent rect. 6 23