BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0594000 Os04g0594000|AK063313
(492 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0594000 RWD domain containing protein 943 0.0
Os04g0593700 RWD domain containing protein 300 2e-81
Os02g0694700 RWD domain containing protein 208 7e-54
Os04g0593800 Nucleic acid-binding, OB-fold domain containin... 193 2e-49
Os04g0593600 Zinc finger, FYVE/PHD-type domain containing p... 135 5e-32
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/492 (93%), Positives = 461/492 (93%)
Query: 1 WLWRRYIRDDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIE 60
WLWRRYIRDDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIE
Sbjct: 1 WLWRRYIRDDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIE 60
Query: 61 GHGDEPEDFSYTCNFEYXXXXXXXXXXXXXXXSKEPPYFTVTVKWMDGPNVSQLCKMLDT 120
GHGDEPEDFSYTCNFEY SKEPPYFTVTVKWMDGPNVSQLCKMLDT
Sbjct: 61 GHGDEPEDFSYTCNFEYLPPLVLTCLLPLSYPSKEPPYFTVTVKWMDGPNVSQLCKMLDT 120
Query: 121 IWAELPGQEVVYRWVESLRNSSRSYLWFDGKITLGPDTPMQKGDNRAISRSLSLESVIPS 180
IWAELPGQEVVYRWVESLRNSSRSYLWFDGKITLGPDTPMQKGDNRAISRSLSLESVIPS
Sbjct: 121 IWAELPGQEVVYRWVESLRNSSRSYLWFDGKITLGPDTPMQKGDNRAISRSLSLESVIPS 180
Query: 181 MLSYSSKKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVF 240
MLSYSSKKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVF
Sbjct: 181 MLSYSSKKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVF 240
Query: 241 QLVCPDTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLEDED 300
QLVCPDTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLEDED
Sbjct: 241 QLVCPDTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLEDED 300
Query: 301 NNAQXXXXXXXXXXXXXXXXHPRRQCLTPEEKLQRRQASGRMSEREVAQEILNIKALYND 360
NNAQ HPRRQCLTPEEKLQRRQASGRMSEREVAQEILNIKALYND
Sbjct: 301 NNAQCPKCSFFFCSFCKEPCHPRRQCLTPEEKLQRRQASGRMSEREVAQEILNIKALYND 360
Query: 361 VRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHFSECKLFAPRDISAWERQ 420
VRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHFSECKLFAPRDISAWERQ
Sbjct: 361 VRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHFSECKLFAPRDISAWERQ 420
Query: 421 MEEQYGNHVRLSLRPVGGTIRCPKCRERNFKDDEKYIFCWACRANYCTMCRREVQDKRGH 480
MEEQYGNHVRLSLRPVGGTIRCPKCRERNFKDDEKYIFCWACRANYCTMCRREVQDKRGH
Sbjct: 421 MEEQYGNHVRLSLRPVGGTIRCPKCRERNFKDDEKYIFCWACRANYCTMCRREVQDKRGH 480
Query: 481 FGSPECVGLEDF 492
FGSPECVGLEDF
Sbjct: 481 FGSPECVGLEDF 492
>Os04g0593700 RWD domain containing protein
Length = 461
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 232/401 (57%), Gaps = 25/401 (6%)
Query: 7 IRDDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIEGHGDEP 66
I D I K GL F++++H ++ DG V A+LS + + D+
Sbjct: 58 IYGDNISILSAKDGLRCFQVHVHCEIPDGISVSAELSRDDNR---------------DQN 102
Query: 67 EDFSYTCNFEYXXXXXXXXXXXXXXXSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELP 126
F T + ++ S PYFT++ +W+D VS LC MLDTIW++
Sbjct: 103 SRFFDTFSVQHLAPISFTCLMPPSYPSHHAPYFTLSSQWLDTVKVSSLCLMLDTIWSQQL 162
Query: 127 GQEVVYRWVESLRNSSRSYLWF-DGKITLGPDTPMQKGDNRAISRSLSLESVIPSMLSYS 185
G EVVY WV+ L++S+ S+L F DG + PD+ M D R ++ +S+ES + ++SY+
Sbjct: 163 GLEVVYGWVQWLQSSALSHLGFNDGIVIQQPDSMMGPVDVRVVAEIVSVESAVQWLISYN 222
Query: 186 SKKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCP 245
++ +++FL LH CMIC ++ G +FI+LPC H FC +C+ T RMHV EG+V +L+CP
Sbjct: 223 EEQCHESFLIGLHDCMICFTERAGIDFIKLPCGHYFCQRCMETYSRMHVAEGTVLKLLCP 282
Query: 246 DTKCNASIPPYVLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRCVIGCLEDEDNNAQX 305
+ KC IPP +LKR+L + +FERW+RLTL+K LDSMSDV YCPRCV CLEDE+NNAQ
Sbjct: 283 NDKCGDIIPPSLLKRMLGDKDFERWERLTLQKTLDSMSDVAYCPRCVTACLEDEENNAQC 342
Query: 306 XXXXXXXXXXXXXXXHPRRQCLTPEEKL--------QRRQASGRMSER-EVAQEILNIKA 356
H +C++PEEKL R+ + G + R +A EI +IK
Sbjct: 343 SKCFFSFCTRCRYLRHIGERCISPEEKLLSLQDRNKVRQLSKGNFARRINLANEISSIKE 402
Query: 357 LYNDVRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAI 397
+ LCP C AIS+ +GC+ M+C NC Q FC+ CGK +
Sbjct: 403 VLRSSVLCPHCGTAISRVSGCDHMLCSNCRQPFCYSCGKPL 443
>Os02g0694700 RWD domain containing protein
Length = 415
Score = 208 bits (530), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 153/269 (56%), Gaps = 10/269 (3%)
Query: 9 DDLACIPETKGGLHYFEIYIHYDLNDGAEVCAKLSSANEKNPKDGRCCVGIEGHGDEPED 68
DDL I + K GL +F+I +HY L V + +GR G E D+ D
Sbjct: 66 DDLV-IFDNKDGLRFFQISLHYQLAGDIRVYLNVC-------PNGRTETGAENDDDDDSD 117
Query: 69 -FSYTCNFEYXXXXXXXXXXXXXXXSKEPPYFTVTVKWMDGPNVSQLCKMLDTIWAELP- 126
Y C+ ++ S PYF V KW+D P VS C +LD IWAE P
Sbjct: 118 RLLYACSLQHLPPVVLACLLPRLYPSHRAPYFVVAAKWLDEPEVSSFCSVLDEIWAEQPA 177
Query: 127 GQEVVYRWVESLRNSSRSYLWFDGKITLGPDTPMQKGDNRAISRSLSLESVIPSMLSYSS 186
GQEVVY+WV+ L SS + D +I GPD GD+RAI RS SL+S+IP + YS
Sbjct: 178 GQEVVYKWVDWLSTSSWFCIASDDQIVFGPDADSAGGDDRAIGRSCSLDSMIPLIQRYSK 237
Query: 187 KKRYQAFLEDLHMCMICLSQSKGSNFIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCPD 246
++ ++ F +H C +CLS++ G NFI+LPC H FCVKC+ T CR+HVKEGSV +L CPD
Sbjct: 238 ERSHEIFARRIHECGVCLSENTGRNFIQLPCSHSFCVKCMETQCRIHVKEGSVARLTCPD 297
Query: 247 TKCNASIPPYVLKRLLTEDEFERWDRLTL 275
T C +PP +L+ LL + E+ RW+ L L
Sbjct: 298 TSCRRPLPPALLRGLLGDGEYARWESLVL 326
>Os04g0593800 Nucleic acid-binding, OB-fold domain containing protein
Length = 305
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 151/286 (52%), Gaps = 15/286 (5%)
Query: 212 FIRLPCQHLFCVKCLGTLCRMHVKEGSVFQLVCPDTKCNASIPPYVLKRLLTEDEFERWD 271
F+ H FC +C+ T RMHV EG+V +L+CP+ KC IPP +LKRLL + +FERW+
Sbjct: 1 FVSPSTGHYFCRRCMETYSRMHVTEGTVLKLLCPNDKCGGIIPPSLLKRLLGDTDFERWE 60
Query: 272 RLTLEKALDSMSDVVYCPRCVIGCLEDEDNNAQXXXXXXXXXXXXXXXXHPRRQCLTPEE 331
RL L+K LDSMSD+ YCPRC CLEDE+NNAQ H +C+T EE
Sbjct: 61 RLILQKTLDSMSDLAYCPRCGAACLEDEENNAQCPKCFFSFCARCRDRRHIGEKCMTIEE 120
Query: 332 KLQRRQ---------ASGRMSEREVAQEILNIKALYNDVRLCPKCRMAISKTAGCNKMVC 382
KL Q S+ ++ EI +IK + CP C AIS+ +GCN M+C
Sbjct: 121 KLNSLQDRTVVPFLSKDSFASKMNLSNEISSIKEVLRSSVRCPHCGTAISRVSGCNHMLC 180
Query: 383 GNCGQFFCFRCGKAIKGYDHFSE-CKLFAPRDISAWERQMEEQYGNHVRLSLRPVGGTIR 441
NC Q FC+ CGKA + + H SE C+ + E+ + L
Sbjct: 181 SNCRQSFCYGCGKA-ENHGHSSEPCRYQENLATKKNPTVLIEEVKKELEGEL---SRQHP 236
Query: 442 CPKCRERNFK-DDEKYIFCWACRANYCTMCRREVQDKRGHFGSPEC 486
CP CR+ N K + ++FCWAC+ +YC C R V+ H+G C
Sbjct: 237 CPNCRQPNPKMGNNSHMFCWACQVHYCAQCHRMVRKSSEHYGPRGC 282
>Os04g0593600 Zinc finger, FYVE/PHD-type domain containing protein
Length = 211
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 113/207 (54%), Gaps = 16/207 (7%)
Query: 293 IGCLEDEDNNAQXXXXXXXXXXXXXXXXHPRRQCLTPEEKL---QRRQASGRMS--EREV 347
CLED DN A H +C++PEEKL ++RQ +G++ + +
Sbjct: 1 TACLEDGDNEAVCSSCLFSFCTLCRDRRHVGDKCMSPEEKLLILEKRQEAGKLQGDQHKF 60
Query: 348 AQEILNIKALYNDVRLCPKCRMAISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHF-SEC 406
+E+ +IKA+ D ++CP+C+MAI K GCNKM C NCGQ+FC++C AI+GY+HF C
Sbjct: 61 LEELRSIKAIMKDSKMCPRCKMAIHKIEGCNKMSCSNCGQYFCYQCNSAIEGYEHFRGSC 120
Query: 407 KLFAPRDISAWERQMEEQYGNHVRLSLRPVGGTI------RCPKCRERNFK-DDEKYIFC 459
KLF ++ W QM + R ++ V + CP CR+ K + ++FC
Sbjct: 121 KLFPQEELDRWNMQMNPRVQ---RQNVAQVQAEMFRQFAHPCPTCRQPCPKMGNNNHVFC 177
Query: 460 WACRANYCTMCRREVQDKRGHFGSPEC 486
WAC+ ++C +CR+ V HFG C
Sbjct: 178 WACQKHFCALCRKTVHKTSQHFGPKGC 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,740,286
Number of extensions: 716803
Number of successful extensions: 1580
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 8
Length of query: 492
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 387
Effective length of database: 11,553,331
Effective search space: 4471139097
Effective search space used: 4471139097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)