BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0580800 Os04g0580800|AK067005
(162 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0580800 Zinc finger, RING-type domain containing protein 327 2e-90
Os02g0682300 Zinc finger, RING-type domain containing protein 119 8e-28
Os02g0681200 Zinc finger, RING-type domain containing protein 70 7e-13
Os08g0157400 Zinc finger, RING-type domain containing protein 69 2e-12
Os04g0579200 Zinc finger, RING-type domain containing protein 64 4e-11
>Os04g0580800 Zinc finger, RING-type domain containing protein
Length = 162
Score = 327 bits (838), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDP 60
MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDP
Sbjct: 1 MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDP 60
Query: 61 LGDDGLQPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNC 120
LGDDGLQPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNC
Sbjct: 61 LGDDGLQPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNC 120
Query: 121 THAFHIGCIDRWIDLGEVTCPLCRSHLLPRQRRGLLGSRRFG 162
THAFHIGCIDRWIDLGEVTCPLCRSHLLPRQRRGLLGSRRFG
Sbjct: 121 THAFHIGCIDRWIDLGEVTCPLCRSHLLPRQRRGLLGSRRFG 162
>Os02g0682300 Zinc finger, RING-type domain containing protein
Length = 164
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/166 (51%), Positives = 99/166 (59%), Gaps = 22/166 (13%)
Query: 1 MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDP 60
M FPLVC+C IP+P++AL KLL A+ A L+L +G+ H P GR P
Sbjct: 1 MGFPLVCYCMAIPKPLIALAKLLAAIREALQLMLFVVGIC--------HHPERSGR---P 49
Query: 61 LGDDGLQPEAVKRGLPLVEYMQLADLSA----DCHDGESGYPATCRVCLERLEATDEVRR 116
D P+ VK LP +E+ QL S C D E+ A C VCLERLEA D VRR
Sbjct: 50 AAVDAPLPDEVKDRLPPLEFAQLLAASEHGCHGCDDDEA--VAGCIVCLERLEADDVVRR 107
Query: 117 LGNCTHAFHIGCIDRWIDLGEVTCPLCRSHLLPRQR-----RGLLG 157
LGNC HAFH GCIDRWIDLG +TCPLCRS LLPR R RG LG
Sbjct: 108 LGNCAHAFHRGCIDRWIDLGRLTCPLCRSTLLPRARPAAGPRGRLG 153
>Os02g0681200 Zinc finger, RING-type domain containing protein
Length = 212
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Query: 66 LQPEAVKRGLPLVEYMQL--ADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNCTHA 123
+ P A++ LP+V + +L + +A C G+ C VCL + DEVRRL NC H
Sbjct: 85 IPPMAIEEALPVVRFDELVASAPAAVCGGGD------CAVCLSGICGRDEVRRLSNCRHV 138
Query: 124 FHIGCIDRWIDLGEVTCPLCRSHLLPRQ 151
FH GC+DRW+ + TCPLCR+ L+P +
Sbjct: 139 FHRGCLDRWMAHEQRTCPLCRAPLIPDE 166
>Os08g0157400 Zinc finger, RING-type domain containing protein
Length = 176
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 67 QPEAVKRGLPLVEYMQLADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNCTHAFHI 126
+P A+K LP V Y + A+C VCL LEA VR LGNC HAFH
Sbjct: 77 EPAAIKARLPAVRYADFVRCRR----AAAAAAASCVVCLGALEARHRVRELGNCAHAFHK 132
Query: 127 GCIDRWIDLGEVTCPLCRSHLLP 149
CID+W+D G+ TCPLCR+ LLP
Sbjct: 133 ACIDKWVDKGQATCPLCRAALLP 155
>Os04g0579200 Zinc finger, RING-type domain containing protein
Length = 212
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 71 VKRGLPLVEYMQL-ADLSADCHDGESGYPATCRVCLERLEATDEVRRLGNCTHAFHIGCI 129
++ LP+V + +L A A C G+ C VCL + DEVRRL NC H FH GC+
Sbjct: 87 IEEVLPVVRFDELVAAAPAVCGGGD------CAVCLSGIGGGDEVRRLSNCRHVFHRGCL 140
Query: 130 DRWIDLGEV-TCPLCRSHLLPRQRRGLL 156
DRW++ + TCPLCR+ L+P + L
Sbjct: 141 DRWMEHDDQRTCPLCRAPLIPDEMASAL 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.147 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,351,645
Number of extensions: 271507
Number of successful extensions: 1284
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 15
Length of query: 162
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,179,899
Effective search space: 840413031
Effective search space used: 840413031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)