Os04g0579200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0579200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.64 | 0.64 | 9.31 | 0.593 | 0.74 | 1.02 | -0.272 | 0.406 | -0.476 | 12 | 69 | 1259 | -- | -- |
| 185.89 | 0.635 | 9.32 | 0.539 | 0.763 | 1.05 | -0.328 | -- | -0.488 | 12 | 69.04 | 1237 | -- | -- |
| 185.89 | 0.635 | 9.31 | 0.596 | 0.763 | 1.03 | -- | 0.488 | -0.478 | 11.9 | 69 | 1237 | -- | -- |
| 186.35 | 0.636 | 9.32 | 0.524 | 0.766 | 1.06 | -- | -- | -0.492 | 11.9 | 69.01 | 1237 | -- | -- |
| 206.28 | 0.669 | 9.33 | 0.668 | -- | 1.01 | -- | 0.498 | -0.528 | -- | 75 | 1525 | -- | -- |
| 226.17 | 0.705 | 9.3 | 0.777 | 0.538 | -- | -0.521 | -- | -0.408 | 11.6 | -- | -- | -- | -- |
| 227.3 | 0.706 | 9.3 | 0.755 | 0.541 | -- | -- | -- | -0.411 | 11.4 | -- | -- | -- | -- |
| 206.05 | 0.669 | 9.35 | 0.605 | -- | 1.11 | -- | -- | -0.555 | -- | 74.99 | 1564 | -- | -- |
| 193.38 | 0.648 | 9.33 | -- | 0.754 | 1.13 | -- | -- | -0.56 | 11.9 | 70 | 1254 | -- | -- |
| 245.67 | 0.732 | 9.32 | 0.741 | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
| 242.32 | 0.728 | 9.32 | -- | 0.533 | -- | -- | -- | -0.495 | 11.3 | -- | -- | -- | -- |
| 214.85 | 0.683 | 9.36 | -- | -- | 1.16 | -- | -- | -0.622 | -- | 74.87 | 1520 | -- | -- |
| 260.13 | 0.753 | 9.33 | -- | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 3 | 182.57 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 184.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 8 | 184.83 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 12 | 185.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 14 | 185.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 27 | 185.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 29 | 186.00 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 33 | 186.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 38 | 186.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 43 | 186.34 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 48 | 186.42 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 4 |
| 50 | 186.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 51 | 186.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 103 | 187.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 14 |
| 108 | 187.26 | humidity | 80 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 126 | 187.34 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 133 | 187.41 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 157 | 187.63 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 171 | 187.73 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 191 | 187.81 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 4 |
| 192 | 187.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 197 | 187.84 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 283 | 188.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 292 | 188.26 | humidity | 50 | 1440 | > th | dose dependent | sin | 0 | NA |
| 339 | 188.42 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 378 | 188.56 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 393 | 188.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 19 |
| 451 | 188.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 522 | 188.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 530 | 189.01 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 1 |
| 542 | 189.03 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 581 | 189.10 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 611 | 189.14 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 613 | 189.14 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 624 | 189.15 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 697 | 189.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 729 | 189.30 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 734 | 189.32 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 754 | 189.35 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 758 | 189.36 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 770 | 189.37 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 812 | 189.48 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 820 | 189.50 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 831 | 189.51 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 933 | 189.71 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 23 |