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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0682300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.12 (0.0587) R2 : 0.426
β1 : -1.78 (0.212) R2dD : 0.1 R2D : 0.0952
β2 : 1.43 (0.145) R2dC : 0.124 R2C : 0.105
β3 : -0.0203 (0.574) R2dE : 3.31e-06 R2E : -0.00174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.8 (2.23) R2dD*E : 0.173 R2D*E : 0.192
γ1 : -0.607 (0.121) R2dN8 : 0.0437 R2N8 : 0.0213
σ : 1.04
deviance : 499.74
__
_____
C
peak time of C : 6.49
E
wheather : wind
threshold : 7.141
memory length : 752
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
502.12 1.05 5.11 -1.77 1.45 -0.103 -0.717 -14.7 -0.597 6.52 7.1 756 17.1 1.1
563.79 1.11 5.22 -1.77 1.48 1.95 -0.51 -- -0.572 6.73 7.2 772 17.1 0.9
499.74 1.04 5.12 -1.78 1.43 -0.0203 -- -14.8 -0.607 6.49 7.141 752 17.2 1.07
549.08 1.09 5.21 -1.55 1.46 3.07 -- -- -0.581 6.68 7.178 763 17.1 1.03
605.34 1.15 5.12 -1.77 -- -0.435 -- -15.5 -0.571 -- 7.197 752 17.1 1.02
634.11 1.18 5.28 -2.05 1.41 -- -0.539 -- -0.845 5.71 -- -- -- --
634.75 1.18 5.28 -2.05 1.4 -- -- -- -0.842 5.8 -- -- -- --
651.09 1.19 5.2 -1.32 -- 1.9 -- -- -0.579 -- 7.282 2177 17.7 0.583
608.62 1.15 5.19 -- 1.5 3.73 -- -- -0.44 6.88 7.2 760 17.1 1.02
736.98 1.27 5.3 -2 -- -- -- -- -0.809 -- -- -- -- --
745.3 1.28 5.23 -- 1.37 -- -- -- -0.614 5.87 -- -- -- --
685.07 1.22 5.21 -- -- 2.73 -- -- -0.436 -- 7.08 2520 17.8 0.633
843 1.36 5.25 -- -- -- -- -- -0.587 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 531.95 wind 7 720 > th dose independent rect. 17 1
3 534.50 humidity 50 720 > th dose dependent rect. 16 10
5 536.46 radiation 10 720 < th dose dependent rect. 16 9
6 537.06 radiation 1 14400 < th dose dependent rect. 23 6
8 537.34 radiation 10 720 < th dose independent rect. 16 1
9 537.77 radiation 1 14400 < th dose dependent rect. 20 9
17 539.54 humidity 50 720 > th dose dependent rect. 16 7
20 540.15 radiation 1 1440 < th dose dependent rect. 9 21
22 540.35 radiation 1 1440 < th dose dependent sin 22 NA
23 540.40 wind 7 720 > th dose independent rect. 16 6
29 540.72 radiation 1 720 < th dose dependent rect. 5 13
34 540.85 wind 5 720 > th dose dependent rect. 17 1
35 540.88 radiation 1 1440 < th dose dependent rect. 9 12
37 540.94 radiation 1 1440 < th dose dependent rect. 9 15
43 540.97 radiation 1 1440 < th dose dependent rect. 9 10
57 541.16 humidity 90 720 < th dose dependent rect. 16 9
58 541.17 radiation 1 1440 < th dose dependent rect. 11 10
66 541.26 radiation 1 1440 < th dose dependent rect. 11 8
103 542.33 wind 5 720 > th dose dependent rect. 16 7
109 542.76 wind 7 720 > th dose independent rect. 16 10
111 542.81 humidity 60 720 > th dose dependent sin 15 NA
112 542.82 radiation 1 1440 < th dose independent rect. 11 19
122 543.14 radiation 1 720 < th dose independent rect. 14 12
144 543.52 radiation 20 720 < th dose dependent rect. 16 1
156 543.59 radiation 1 1440 > th dose independent rect. 11 19
169 544.06 wind 7 720 > th dose independent rect. 16 17
183 544.42 temperature 20 14400 > th dose independent rect. 4 1
187 544.45 radiation 1 720 < th dose dependent rect. 5 21
190 544.49 radiation 1 720 < th dose independent rect. 8 18
204 544.80 temperature 20 14400 < th dose independent rect. 4 1
212 545.02 radiation 1 720 < th dose independent rect. 16 10
225 545.27 radiation 1 1440 < th dose dependent rect. 5 16
229 545.31 radiation 1 1440 < th dose dependent rect. 5 19
258 545.94 radiation 1 14400 < th dose dependent rect. 3 2
273 546.31 temperature 20 14400 > th dose independent rect. 4 4
274 546.31 radiation 1 1440 < th dose dependent rect. 20 22
278 546.36 radiation 1 1440 < th dose dependent rect. 23 19
325 546.82 radiation 1 1440 < th dose dependent rect. 23 22
338 546.89 radiation 1 1440 < th dose dependent no NA NA
349 546.98 radiation 1 1440 < th dose dependent rect. 11 23
350 546.99 temperature 20 14400 < th dose independent rect. 4 4
400 547.99 humidity 90 720 < th dose dependent sin 14 NA
429 548.33 temperature 20 14400 > th dose independent rect. 4 12
470 548.81 temperature 20 14400 < th dose independent rect. 4 12
471 548.83 humidity 80 43200 > th dose independent rect. 12 2
476 548.87 radiation 1 1440 < th dose dependent rect. 16 23
508 549.30 radiation 1 1440 < th dose independent sin 14 NA
529 549.45 humidity 70 720 > th dose independent rect. 16 10
538 549.57 radiation 1 1440 < th dose independent rect. 11 10
553 549.65 radiation 1 1440 < th dose independent rect. 11 8
557 549.68 radiation 1 1440 > th dose independent rect. 11 8
570 549.70 temperature 20 43200 < th dose independent rect. 7 1
589 549.80 radiation 1 1440 > th dose independent sin 15 NA
608 549.95 humidity 80 43200 > th dose independent rect. 12 4
629 550.07 radiation 1 720 < th dose independent sin 17 NA
639 550.13 temperature 20 14400 > th dose independent sin 3 NA
667 550.20 wind 5 720 > th dose dependent rect. 15 18
681 550.28 humidity 80 43200 > th dose dependent rect. 12 2
705 550.39 radiation 1 1440 < th dose independent sin 22 NA
709 550.41 temperature 20 14400 < th dose independent sin 3 NA
743 550.60 humidity 70 720 > th dose independent rect. 14 12
767 550.68 humidity 80 43200 > th dose dependent rect. 11 4
770 550.70 wind 7 4320 > th dose independent rect. 17 1
809 550.95 radiation 1 1440 < th dose independent rect. 16 14
812 550.98 humidity 90 14400 < th dose independent rect. 21 5
817 551.01 humidity 80 43200 < th dose independent rect. 15 1
821 551.04 radiation 1 1440 > th dose independent sin 21 NA
849 551.22 temperature 20 14400 > th dose dependent rect. 2 1
884 551.36 wind 7 4320 > th dose independent rect. 17 4
897 551.47 humidity 90 14400 > th dose independent rect. 5 2
931 551.63 humidity 80 720 < th dose independent rect. 15 6
970 551.81 humidity 70 720 > th dose independent rect. 14 14
982 551.88 humidity 80 43200 > th dose dependent rect. 14 1