BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0682300 Os02g0682300|AK107937
         (164 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0682300  Zinc finger, RING-type domain containing protein    236   7e-63
Os04g0580800  Zinc finger, RING-type domain containing protein    100   6e-22
Os08g0157400  Zinc finger, RING-type domain containing protein     70   1e-12
Os04g0579200  Zinc finger, RING-type domain containing protein     65   3e-11
Os02g0681200  Zinc finger, RING-type domain containing protein     64   6e-11

>Os02g0682300 Zinc finger, RING-type domain containing protein
          Length = 164

 Score =  236 bits (601), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 120/136 (88%)

Query: 1   MGFPLVCYCMXXXXXXXXXXXXXXXXREALQLMLFVVGICHHPERSGRPAAVDAPLPDEV 60
           MGFPLVCYCM                REALQLMLFVVGICHHPERSGRPAAVDAPLPDEV
Sbjct: 1   MGFPLVCYCMAIPKPLIALAKLLAAIREALQLMLFVVGICHHPERSGRPAAVDAPLPDEV 60

Query: 61  KDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERLEADDVVRRLGNCAHAFHRGCI 120
           KDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERLEADDVVRRLGNCAHAFHRGCI
Sbjct: 61  KDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERLEADDVVRRLGNCAHAFHRGCI 120

Query: 121 DRWIDLGRLTCPLCRS 136
           DRWIDLGRLTCPLCRS
Sbjct: 121 DRWIDLGRLTCPLCRS 136



>Os04g0580800 Zinc finger, RING-type domain containing protein
          Length = 162

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/149 (45%), Positives = 77/149 (51%), Gaps = 17/149 (11%)

Query: 1   MGFPLVCYCMXXXXXXXXXXXXXXXXREALQLMLFVVGIC--------HHPERSGR---P 49
           M FPLVC+C                   A  L+L  +G+         H P   GR   P
Sbjct: 1   MSFPLVCFCRQIPRPIVALFKLLQAVALAFVLILCFLGLYEFPYTVEDHAPLIHGRRRDP 60

Query: 50  AAVDAPLPDEVKDRLPPLEFAQLLAASEHGCHGCDDDEA--VAGCIVCLERLEADDVVRR 107
              D   P+ VK  LP +E+ QL   S      C D E+   A C VCLERLEA D VRR
Sbjct: 61  LGDDGLQPEAVKRGLPLVEYMQLADLSAD----CHDGESGYPATCRVCLERLEATDEVRR 116

Query: 108 LGNCAHAFHRGCIDRWIDLGRLTCPLCRS 136
           LGNC HAFH GCIDRWIDLG +TCPLCRS
Sbjct: 117 LGNCTHAFHIGCIDRWIDLGEVTCPLCRS 145



>Os08g0157400 Zinc finger, RING-type domain containing protein
          Length = 176

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 63/157 (40%), Gaps = 27/157 (17%)

Query: 1   MGFPLVCYCMXXXXXXXXXXXXXXXXREALQLMLFVVGICHHPERSGRP----------- 49
           MGFP VCYC+                R A  L L  +G+   P     P           
Sbjct: 1   MGFPSVCYCVILPQPLVLVLQLLDLLRHAFLLCLSALGLAAPPLPDEHPAYAPPPPPPAS 60

Query: 50  ----------AAVDAPLPDEVKDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERL 99
                     A   AP P  +K RLP + +A  +                 G       L
Sbjct: 61  MAALPADLVWAFQPAPEPAAIKARLPAVRYADFVRCRRAAAAAAASCVVCLGA------L 114

Query: 100 EADDVVRRLGNCAHAFHRGCIDRWIDLGRLTCPLCRS 136
           EA   VR LGNCAHAFH+ CID+W+D G+ TCPLCR+
Sbjct: 115 EARHRVRELGNCAHAFHKACIDKWVDKGQATCPLCRA 151



>Os04g0579200 Zinc finger, RING-type domain containing protein
          Length = 212

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 8/78 (10%)

Query: 60  VKDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERLEADDVVRRLGNCAHAFHRGC 119
           +++ LP + F +L+AA+   C G D       C VCL  +   D VRRL NC H FHRGC
Sbjct: 87  IEEVLPVVRFDELVAAAPAVCGGGD-------CAVCLSGIGGGDEVRRLSNCRHVFHRGC 139

Query: 120 IDRWIDL-GRLTCPLCRS 136
           +DRW++   + TCPLCR+
Sbjct: 140 LDRWMEHDDQRTCPLCRA 157



>Os02g0681200 Zinc finger, RING-type domain containing protein
          Length = 212

 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 6/80 (7%)

Query: 57  PDEVKDRLPPLEFAQLLAASEHGCHGCDDDEAVAGCIVCLERLEADDVVRRLGNCAHAFH 116
           P  +++ LP + F +L+A++     G  D      C VCL  +   D VRRL NC H FH
Sbjct: 87  PMAIEEALPVVRFDELVASAPAAVCGGGD------CAVCLSGICGRDEVRRLSNCRHVFH 140

Query: 117 RGCIDRWIDLGRLTCPLCRS 136
           RGC+DRW+   + TCPLCR+
Sbjct: 141 RGCLDRWMAHEQRTCPLCRA 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.145    0.507 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,014,298
Number of extensions: 201709
Number of successful extensions: 1230
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1316
Number of HSP's successfully gapped: 6
Length of query: 164
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 71
Effective length of database: 12,179,899
Effective search space: 864772829
Effective search space used: 864772829
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 152 (63.2 bits)