Os08g0157400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0157400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.55 | 0.377 | 10.9 | -0.15 | 1.42 | 0.966 | 0.77 | -3.31 | 0.0633 | 3.8 | 24.8 | 1185 | -- | -- |
| 68.13 | 0.384 | 10.8 | 0.666 | 1.44 | 0.618 | 0.497 | -- | 0.298 | 3.73 | 25.58 | 1202 | -- | -- |
| 66.19 | 0.379 | 10.9 | -0.0852 | 1.43 | 0.923 | -- | -2.98 | 0.0952 | 3.71 | 25.16 | 1211 | -- | -- |
| 68.97 | 0.387 | 10.8 | 0.664 | 1.44 | 0.604 | -- | -- | 0.307 | 3.65 | 25.89 | 1215 | -- | -- |
| 170.4 | 0.611 | 10.8 | 1.1 | -- | -1.35 | -- | 0.0602 | 0.473 | -- | 25.16 | 1211 | -- | -- |
| 81.59 | 0.423 | 10.8 | 0.863 | 1.53 | -- | 0.646 | -- | 0.35 | 3.52 | -- | -- | -- | -- |
| 82.86 | 0.426 | 10.8 | 0.852 | 1.53 | -- | -- | -- | 0.346 | 3.48 | -- | -- | -- | -- |
| 170.4 | 0.611 | 10.8 | 1.09 | -- | -1.34 | -- | -- | 0.471 | -- | 25.16 | 1211 | -- | -- |
| 79.77 | 0.416 | 10.8 | -- | 1.42 | 0.742 | -- | -- | 0.202 | 3.67 | 25.3 | 1235 | -- | -- |
| 213.63 | 0.683 | 10.8 | 0.916 | -- | -- | -- | -- | 0.386 | -- | -- | -- | -- | -- |
| 101.97 | 0.472 | 10.8 | -- | 1.55 | -- | -- | -- | 0.251 | 3.48 | -- | -- | -- | -- |
| 187 | 0.637 | 10.9 | -- | -- | 1.14 | -- | -- | 0.156 | -- | 24.2 | 1190 | -- | -- |
| 235.76 | 0.717 | 10.8 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.21 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 3 | 62.37 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 8 | 62.75 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 13 | 62.94 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 26 | 63.33 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 36 | 63.53 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 37 | 63.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 38 | 63.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 39 | 63.55 | wind | 5.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 50 | 63.70 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 51 | 63.70 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 55 | 63.76 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 76 | 63.91 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 99 | 64.00 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 102 | 64.02 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 104 | 64.06 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 133 | 64.27 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 134 | 64.27 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 135 | 64.28 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 141 | 64.32 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 145 | 64.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 146 | 64.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 150 | 64.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 155 | 64.41 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 156 | 64.41 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 158 | 64.43 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 2 |
| 159 | 64.43 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 160 | 64.43 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 162 | 64.46 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 165 | 64.48 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 171 | 64.49 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 181 | 64.53 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 183 | 64.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 186 | 64.54 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 189 | 64.54 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 195 | 64.54 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 196 | 64.54 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 22 |
| 198 | 64.56 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 200 | 64.58 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 202 | 64.58 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 203 | 64.58 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 206 | 64.58 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 207 | 64.58 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 256 | 64.70 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 295 | 64.86 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 304 | 64.93 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 317 | 64.99 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 319 | 65.00 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 324 | 65.02 | radiation | 20.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 327 | 65.02 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 328 | 65.04 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 329 | 65.05 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 335 | 65.07 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 356 | 65.10 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 359 | 65.11 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 373 | 65.14 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 377 | 65.15 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 396 | 65.18 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 399 | 65.18 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 405 | 65.20 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 408 | 65.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 411 | 65.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 414 | 65.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 415 | 65.21 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 429 | 65.25 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 470 | 65.36 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 472 | 65.39 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 525 | 65.50 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 529 | 65.50 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 553 | 65.53 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 571 | 65.60 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 576 | 65.61 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 593 | 65.66 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 596 | 65.67 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 619 | 65.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 644 | 65.81 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 649 | 65.82 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 655 | 65.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 660 | 65.87 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 667 | 65.88 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 676 | 65.91 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 10 |
| 702 | 66.03 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 719 | 66.07 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 799 | 66.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 23 |
| 803 | 66.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 851 | 66.31 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 852 | 66.31 | humidity | 90.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 881 | 66.37 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 885 | 66.38 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 942 | 66.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 946 | 66.44 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 951 | 66.45 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
| 961 | 66.45 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 983 | 66.47 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 986 | 66.47 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 987 | 66.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 994 | 66.48 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 12 |