Os04g0580800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os04g0580800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 346.37 | 0.874 | 7.46 | -2.41 | 3.56 | -1.82 | -0.304 | -0.0286 | 0.64 | 2.62 | 19.8 | 272 | -- | -- |
| 346.1 | 0.866 | 7.46 | -2.42 | 3.56 | -1.85 | -0.361 | -- | 0.636 | 2.63 | 19.7 | 269 | -- | -- |
| 346.68 | 0.867 | 7.46 | -2.39 | 3.56 | -1.81 | -- | -0.0888 | 0.647 | 2.62 | 19.8 | 272 | -- | -- |
| 346.59 | 0.867 | 7.46 | -2.42 | 3.56 | -1.86 | -- | -- | 0.643 | 2.63 | 19.68 | 270 | -- | -- |
| 976.67 | 1.46 | 7.46 | -2.45 | -- | -2.1 | -- | -0.0811 | 0.647 | -- | 19.79 | 935 | -- | -- |
| 432.98 | 0.975 | 7.39 | -1.81 | 3.32 | -- | -0.098 | -- | 0.942 | 2.55 | -- | -- | -- | -- |
| 433.01 | 0.974 | 7.39 | -1.81 | 3.32 | -- | -- | -- | 0.943 | 2.55 | -- | -- | -- | -- |
| 976.43 | 1.46 | 7.46 | -2.5 | -- | -2.17 | -- | -- | 0.622 | -- | 19.64 | 932 | -- | -- |
| 473.64 | 1.01 | 7.41 | -- | 3.54 | -1.05 | -- | -- | 0.94 | 2.54 | 20.3 | 98 | -- | -- |
| 1079.62 | 1.54 | 7.37 | -1.67 | -- | -- | -- | -- | 1.03 | -- | -- | -- | -- | -- |
| 519.08 | 1.07 | 7.35 | -- | 3.28 | -- | -- | -- | 1.14 | 2.54 | -- | -- | -- | -- |
| 1099.22 | 1.54 | 7.4 | -- | -- | -1.07 | -- | -- | 0.885 | -- | 22.21 | 995 | -- | -- |
| 1152.84 | 1.58 | 7.33 | -- | -- | -- | -- | -- | 1.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 345.29 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 2 | 345.54 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 3 |
| 3 | 346.65 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 23 |
| 4 | 347.07 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 15 |
| 5 | 347.12 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 23 |
| 6 | 347.13 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 19 |
| 9 | 347.24 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 22 |
| 73 | 349.14 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 79 | 349.37 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 80 | 349.40 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 13 |
| 82 | 349.44 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 84 | 349.55 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 21 |
| 89 | 349.86 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 92 | 349.94 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 114 | 351.04 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 17 |
| 120 | 351.24 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 126 | 351.35 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 23 |
| 170 | 352.31 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 23 |
| 173 | 352.46 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 177 | 352.56 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 13 |
| 208 | 353.31 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 9 |
| 308 | 355.13 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 23 |
| 309 | 355.17 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 314 | 355.21 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 350 | 355.70 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 415 | 356.84 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 16 |
| 418 | 356.85 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 419 | 356.89 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 424 | 356.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 492 | 357.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 503 | 358.04 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 547 | 358.49 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 596 | 359.17 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 618 | 359.51 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 18 |
| 630 | 359.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 641 | 359.82 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 678 | 360.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 721 | 360.90 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 770 | 361.61 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 808 | 362.11 | temperature | 20 | 720 | < th | dose independent | sin | 17 | NA |
| 811 | 362.13 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 825 | 362.23 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 865 | 362.67 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 866 | 362.72 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 890 | 363.07 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 915 | 363.27 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 989 | 364.01 | temperature | 20 | 270 | < th | dose dependent | sin | 10 | NA |