BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0544200 Os04g0544200|Os04g0544200
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0544200 Negative regulatory factor PREG family protein 337 3e-93
Os02g0652000 PREG-like protein 224 4e-59
Os10g0563900 Negative regulatory factor PREG family protein 195 2e-50
Os04g0552300 Negative regulatory factor PREG family protein 105 3e-23
Os11g0287200 96 1e-20
Os05g0475200 81 7e-16
Os02g0125400 Cyclin-like domain containing protein 78 4e-15
Os02g0125450 Cyclin-like domain containing protein 71 6e-13
>Os04g0544200 Negative regulatory factor PREG family protein
Length = 212
Score = 337 bits (865), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/212 (81%), Positives = 172/212 (81%)
Query: 1 MAEEEDLADMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRA 60
MAEEEDLADMPRVVGVLAALLERVTERND TTKPDITVRA
Sbjct: 1 MAEEEDLADMPRVVGVLAALLERVTERNDAAAAELELAVAGAPAASAFRATTKPDITVRA 60
Query: 61 YMARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDD 120
YMARIARFAGCSPACYVVAYIYLD ACAFSVDSYSVHRLLITAVLAAVKFMDD
Sbjct: 61 YMARIARFAGCSPACYVVAYIYLDRLLRRRRRACAFSVDSYSVHRLLITAVLAAVKFMDD 120
Query: 121 ICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEXX 180
ICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELE
Sbjct: 121 ICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEPP 180
Query: 181 XXXXXXXXXRLHCFLSEDDTSSSGSTQHQLAA 212
RLHCFLSEDDTSSSGSTQHQLAA
Sbjct: 181 PSPSPAPAARLHCFLSEDDTSSSGSTQHQLAA 212
>Os02g0652000 PREG-like protein
Length = 212
Score = 224 bits (570), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/196 (64%), Positives = 132/196 (67%), Gaps = 16/196 (8%)
Query: 9 DMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMARIARF 68
DMPRVV LA +LERV RND T KP I+VRAY ARIARF
Sbjct: 15 DMPRVVAALAGILERVAGRNDAAATPAELAAAPASPFRA---TAKPGISVRAYAARIARF 71
Query: 69 AGCSPACYVVAYIYLDXXXXXXXXAC--AFSVDSYSVHRLLITAVLAAVKFMDDICYNNA 126
AGCSPACYVVAYIYLD A +VDSYSVHRLLITAVL+AVKFMDDICYNNA
Sbjct: 72 AGCSPACYVVAYIYLDRLLRRGRRCLALALAVDSYSVHRLLITAVLSAVKFMDDICYNNA 131
Query: 127 YFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEXXXXXXXX 186
YFAKVGG+SL EMNYLEVDFLFGVGFDLNV+PETF YCAVLQSEMLC
Sbjct: 132 YFAKVGGISLAEMNYLEVDFLFGVGFDLNVTPETFADYCAVLQSEMLC----------AA 181
Query: 187 XXXRLH-CFLSEDDTS 201
RLH C LSEDD
Sbjct: 182 PPTRLHYCCLSEDDAG 197
>Os10g0563900 Negative regulatory factor PREG family protein
Length = 212
Score = 195 bits (495), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/190 (55%), Positives = 124/190 (65%), Gaps = 9/190 (4%)
Query: 10 MPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMARIARFA 69
+PRVV +L++LL+RV ERND T KP I++ Y+ RI RFA
Sbjct: 10 VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLT-KPAISIGGYLERIFRFA 68
Query: 70 GCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAYFA 129
CSP+CYVVAYIYLD A +VDS++VHRLLIT+VL AVKF+DDICYNNAYFA
Sbjct: 69 NCSPSCYVVAYIYLDRFLRRRP---ALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFA 125
Query: 130 KVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLELEXXXXXXXXXXX 189
+VGG+SL EMNYLEVDFLFG+ FDLNV+P F YCAVLQSEM LE
Sbjct: 126 RVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLE-----QPPAVDLP 180
Query: 190 RLHCFLSEDD 199
RLHC S+ D
Sbjct: 181 RLHCCPSDQD 190
>Os04g0552300 Negative regulatory factor PREG family protein
Length = 217
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 11 PRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMARIARFAG 70
P VV VLA+LLER RN+ T D+++ A++ R +R+A
Sbjct: 26 PVVVSVLASLLERHIARNERDQAAAADGEAARRARAFDSGTV-LDMSLHAFLERFSRYAN 84
Query: 71 CSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAYFAK 130
SP YVVAY YLD V S + RLL TA+L A KF++D Y N+YFA
Sbjct: 85 VSPQVYVVAYAYLDRLRR----GDGVRVVSANAQRLLTTAILVASKFVEDRNYKNSYFAA 140
Query: 131 VGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM 172
VGG++ E++ LE+DFLF + F LNVS F YC L+ E+
Sbjct: 141 VGGLTAAELSSLELDFLFLMQFRLNVSVSVFQSYCRHLEREV 182
>Os11g0287200
Length = 91
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 148 FGVGFDLNVSPETFGHYCAVLQSEMLCLELEXXXXXXXXXXXRLHCFLSEDDTSSSGSTQ 207
GVGFDLNV ETFGHYCAVLQSEMLCLELE RLHCFLSEDDTS+S STQ
Sbjct: 28 LGVGFDLNVPLETFGHYCAVLQSEMLCLELEPPPSPSPAPAARLHCFLSEDDTSTS-STQ 86
Query: 208 HQLAA 212
HQLAA
Sbjct: 87 HQLAA 91
>Os05g0475200
Length = 96
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 148 FGVGFDLNVSPETFGHYCAVLQSEMLCLELEXXXXXXXXXXXRLHCFLSEDDTSSSGSTQ 207
G+GFDLNV PETFGHYCAVLQSEMLCLELE R HCFLSEDDTSSS STQ
Sbjct: 33 LGIGFDLNVPPETFGHYCAVLQSEMLCLELEPTPSPFPAPAARSHCFLSEDDTSSS-STQ 91
Query: 208 HQLAA 212
HQLAA
Sbjct: 92 HQLAA 96
>Os02g0125400 Cyclin-like domain containing protein
Length = 142
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 13/83 (15%)
Query: 52 TKPDITVRAYMARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFS-------------V 98
T+P+I+VR Y RI R+AGCSPAC+VVA +YLD + V
Sbjct: 60 TRPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRSPEEESSPSPSPPATAAAAVCV 119
Query: 99 DSYSVHRLLITAVLAAVKFMDDI 121
DSYSVHRLLIT+V+ A KFMDD+
Sbjct: 120 DSYSVHRLLITSVMVAAKFMDDM 142
>Os02g0125450 Cyclin-like domain containing protein
Length = 115
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 123 YNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM 172
YNNAYFA+VGGV + EMN LE++ LF + F LNV+P TF YCA L+ EM
Sbjct: 6 YNNAYFARVGGVEVAEMNGLELELLFALRFRLNVTPATFATYCAALEGEM 55
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,393,583
Number of extensions: 159059
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 8
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)