Os10g0563900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Negative regulatory factor PREG family protein.
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Os10g0563900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Negative regulatory factor PREG family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 455.93 | 1 | 5.11 | -3.84 | 2.51 | 1.92 | -1.36 | -3.87 | -0.901 | 6.25 | 25.12 | 1337 | -- | -- |
| 460.75 | 1 | 5.03 | -2.89 | 2.5 | 1.73 | -1.31 | -- | -0.857 | 6.3 | 21.29 | 1265 | -- | -- |
| 460.49 | 0.999 | 5.11 | -3.86 | 2.5 | 1.92 | -- | -3.87 | -0.912 | 6.24 | 24.96 | 1337 | -- | -- |
| 465.08 | 1 | 5.03 | -2.89 | 2.51 | 1.71 | -- | -- | -0.846 | 6.31 | 21.16 | 1251 | -- | -- |
| 779.71 | 1.3 | 5.15 | -3.57 | -- | 2.1 | -- | -2.64 | -0.913 | -- | 23.9 | 1318 | -- | -- |
| 553.51 | 1.1 | 4.95 | -2.29 | 2.61 | -- | -1.16 | -- | -0.462 | 5.97 | -- | -- | -- | -- |
| 556.79 | 1.11 | 4.95 | -2.3 | 2.6 | -- | -- | -- | -0.458 | 5.95 | -- | -- | -- | -- |
| 784.17 | 1.3 | 5.05 | -2.86 | -- | 1.82 | -- | -- | -0.713 | -- | 23.9 | 1314 | -- | -- |
| 656.53 | 1.19 | 4.85 | -- | 2.52 | 0.902 | -- | -- | -0.00187 | 6.18 | 30.22 | 1237 | -- | -- |
| 908.17 | 1.41 | 4.99 | -2.23 | -- | -- | -- | -- | -0.398 | -- | -- | -- | -- | -- |
| 696.6 | 1.23 | 4.89 | -- | 2.57 | -- | -- | -- | -0.201 | 6 | -- | -- | -- | -- |
| 981.23 | 1.46 | 4.96 | -- | -- | 1.18 | -- | -- | -0.256 | -- | 24.9 | 1304 | -- | -- |
| 1038.87 | 1.5 | 4.93 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 444.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 2 | 445.02 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 445.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 4 | 445.25 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 8 | 446.49 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 11 | 447.84 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 19 | 450.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 24 | 450.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 31 | 451.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 33 | 452.09 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 39 | 452.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 62 | 453.63 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 73 | 453.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 74 | 454.02 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 77 | 454.15 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 91 | 454.36 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 104 | 455.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 107 | 455.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 110 | 455.26 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 156 | 455.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 174 | 456.21 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 200 | 456.74 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 212 | 456.99 | humidity | 70 | 4320 | > th | dose independent | rect. | 19 | 12 |
| 213 | 456.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 224 | 457.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 235 | 457.25 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 257 | 457.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 258 | 457.36 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 272 | 457.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 276 | 457.49 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 284 | 457.54 | wind | 9 | 43200 | < th | dose independent | sin | 15 | NA |
| 286 | 457.54 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 303 | 457.67 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 310 | 457.75 | wind | 9 | 43200 | > th | dose independent | sin | 15 | NA |
| 344 | 458.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 20 |
| 356 | 458.18 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 428 | 458.64 | wind | 7 | 43200 | > th | dose dependent | sin | 15 | NA |
| 463 | 458.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 487 | 458.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 498 | 458.93 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 527 | 459.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 535 | 459.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 580 | 459.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 596 | 459.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 619 | 459.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 670 | 459.59 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 672 | 459.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 710 | 459.76 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 715 | 459.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 745 | 459.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 755 | 459.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 760 | 459.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 767 | 460.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 13 |
| 777 | 460.08 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 783 | 460.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 788 | 460.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 794 | 460.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 818 | 460.21 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 835 | 460.23 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 897 | 460.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 973 | 460.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 982 | 460.87 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 997 | 460.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 999 | 460.93 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 3 |