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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0552300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Negative regulatory factor PREG family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.89 (0.0701) R2 : 0.533
β1 : -4.57 (0.402) R2dD : 0.521 R2D : -0.0553
β2 : 2 (0.136) R2dC : 0.224 R2C : 0.175
β3 : 2.75 (0.218) R2dE : 0.266 R2E : -0.0486
β4 : -2.23 (0.537) R2dD*C : 0.0179 R2D*C : -0.0136
β5 : -6.86 (1.39) R2dD*E : 0.102 R2D*E : -0.305
γ1 : -0.888 (0.144) R2dN8 : 0.0752 R2N8 : -0.0467
σ : 1.06
deviance : 507.94
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_____
C
peak time of C : 13.8
E
wheather : temperature
threshold : 24.55
memory length : 1470
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 1.72

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
507.94 1.06 4.89 -4.57 2 2.75 -2.23 -6.86 -0.888 13.8 24.55 1470 15.1 1.72
525.18 1.07 4.68 -2.85 1.97 2.66 -2.2 -- -0.603 13.6 20.25 1508 15.5 2.82
526.36 1.07 4.89 -4.57 2.01 2.77 -- -6.39 -0.899 13.6 24.26 1467 15.1 1.77
539.82 1.08 4.71 -2.94 1.94 2.77 -- -- -0.631 13.2 20.33 1519 15.4 2.93
738.01 1.27 4.79 -3.96 -- 3.2 -- -6.63 -0.77 -- 22.79 1617 15.2 1.5
696.63 1.24 4.64 -2.19 1.93 -- -2.29 -- -0.324 13.8 -- -- -- --
716.45 1.25 4.65 -2.26 1.93 -- -- -- -0.339 13.6 -- -- -- --
760.7 1.28 4.73 -3.17 -- 3.37 -- -- -0.663 -- 19.56 1598 14.3 3.07
757.55 1.28 4.66 -- 2.04 2.13 -- -- -0.267 13.2 20.16 1531 15.9 2.35
943.3 1.44 4.67 -2.34 -- -- -- -- -0.381 -- -- -- -- --
851.15 1.36 4.59 -- 1.97 -- -- -- -0.0871 13.6 -- -- -- --
990.12 1.47 4.66 -- -- 2.2 -- -- -0.271 -- 20.95 1618 15.4 1.55
1087.52 1.54 4.61 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 512.02 temperature 25 1440 > th dose dependent rect. 15 2
3 513.64 temperature 20 1440 > th dose dependent rect. 13 5
4 513.77 temperature 20 1440 > th dose dependent rect. 11 7
11 514.62 temperature 20 1440 > th dose dependent rect. 13 1
41 518.07 wind 5 43200 > th dose independent rect. 19 2
42 518.30 wind 5 43200 < th dose independent rect. 19 2
64 519.62 temperature 25 1440 > th dose dependent rect. 13 10
72 519.96 wind 3 43200 > th dose dependent rect. 20 1
95 520.68 wind 5 43200 > th dose dependent sin 16 NA
103 520.91 wind 5 43200 > th dose dependent rect. 15 8
107 521.00 temperature 25 1440 > th dose dependent rect. 13 20
125 521.57 wind 5 43200 > th dose dependent rect. 13 18
139 521.88 temperature 25 1440 > th dose dependent sin 19 NA
149 522.01 temperature 10 1440 > th dose dependent rect. 15 2
262 524.32 wind 9 43200 < th dose dependent rect. 20 1
273 524.48 wind 5 43200 > th dose independent sin 15 NA
283 524.60 wind 5 43200 > th dose independent rect. 11 20
288 524.65 temperature 25 1440 > th dose dependent rect. 6 13
307 524.88 wind 5 43200 > th dose independent rect. 15 15
336 525.35 wind 5 43200 < th dose independent rect. 10 21
347 525.45 temperature 25 1440 > th dose dependent rect. 6 17
378 525.73 wind 5 43200 > th dose independent rect. 18 4
393 525.81 temperature 25 1440 > th dose dependent rect. 21 22
409 525.95 wind 5 43200 > th dose independent rect. 14 18
431 526.10 wind 5 43200 < th dose independent sin 14 NA
465 526.36 wind 5 43200 < th dose independent rect. 15 16
530 526.83 wind 5 43200 < th dose independent rect. 18 4
543 526.93 temperature 25 1440 > th dose dependent no NA NA
550 526.97 wind 5 43200 > th dose dependent rect. 6 16
568 527.12 wind 7 43200 < th dose independent rect. 13 18
627 527.60 wind 5 43200 > th dose independent rect. 5 19
653 527.79 wind 5 43200 < th dose independent rect. 4 20
671 527.91 wind 5 43200 > th dose independent rect. 16 7
690 528.00 humidity 80 43200 > th dose independent rect. 22 1
722 528.20 wind 5 43200 > th dose independent rect. 16 9
724 528.22 wind 7 43200 < th dose independent rect. 13 16
820 528.85 humidity 80 43200 < th dose independent rect. 21 2
903 529.35 wind 5 43200 > th dose independent rect. 23 22
907 529.38 wind 7 43200 < th dose independent rect. 15 10
967 529.70 wind 5 43200 < th dose independent no NA NA
1000 529.94 wind 7 43200 < th dose independent rect. 15 7