Os04g0544200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Negative regulatory factor PREG family protein.
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Os04g0544200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Negative regulatory factor PREG family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 409.21 | 0.95 | 7.3 | -3.42 | 2.35 | 1.81 | -1.71 | 5.34 | -0.935 | 0.898 | 62.71 | 643 | -- | -- |
| 438.46 | 0.975 | 7.31 | -3.02 | 2.25 | 2.61 | -2.66 | -- | -0.895 | 0.119 | 50.48 | 573 | -- | -- |
| 420.1 | 0.955 | 7.3 | -3.39 | 2.42 | 1.82 | -- | 6.02 | -0.935 | 0.923 | 63.1 | 674 | -- | -- |
| 466.73 | 1.01 | 7.3 | -2.92 | 2.44 | 2.21 | -- | -- | -0.915 | 0.837 | 48 | 655 | -- | -- |
| 590.2 | 1.14 | 7.24 | -2.98 | -- | 2.39 | -- | -0.336 | -0.813 | -- | 61.44 | 230 | -- | -- |
| 521.69 | 1.07 | 7.29 | -3.05 | 2.46 | -- | -1.37 | -- | -0.971 | 2.38 | -- | -- | -- | -- |
| 527.9 | 1.08 | 7.28 | -3.01 | 2.46 | -- | -- | -- | -0.964 | 2.55 | -- | -- | -- | -- |
| 579.64 | 1.12 | 7.25 | -2.98 | -- | 2.51 | -- | -- | -0.827 | -- | 61.24 | 97 | -- | -- |
| 689.12 | 1.22 | 7.23 | -- | 2.49 | 2.49 | -- | -- | -0.583 | 0.65 | 38.83 | 686 | -- | -- |
| 884.27 | 1.39 | 7.26 | -2.91 | -- | -- | -- | -- | -0.903 | -- | -- | -- | -- | -- |
| 766.94 | 1.3 | 7.2 | -- | 2.41 | -- | -- | -- | -0.629 | 2.53 | -- | -- | -- | -- |
| 813.85 | 1.33 | 7.18 | -- | -- | 2.53 | -- | -- | -0.521 | -- | 59.06 | 94 | -- | -- |
| 1107.17 | 1.55 | 7.19 | -- | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 402.45 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 11 | 405.42 | radiation | 1 | 720 | > th | dose independent | sin | 11 | NA |
| 29 | 408.50 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 41 | 410.26 | humidity | 60 | 720 | > th | dose dependent | rect. | 24 | 22 |
| 51 | 410.80 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 20 |
| 62 | 411.53 | humidity | 60 | 720 | > th | dose dependent | rect. | 8 | 22 |
| 105 | 413.42 | radiation | 30 | 720 | < th | dose independent | rect. | 14 | 8 |
| 113 | 413.80 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 21 |
| 116 | 413.90 | humidity | 60 | 720 | > th | dose dependent | rect. | 1 | 13 |
| 117 | 413.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 128 | 414.40 | humidity | 60 | 720 | > th | dose dependent | no | NA | NA |
| 165 | 415.79 | humidity | 90 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 173 | 415.99 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 17 |
| 221 | 417.62 | humidity | 60 | 720 | > th | dose dependent | sin | 5 | NA |
| 231 | 417.97 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 11 |
| 234 | 418.00 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 16 |
| 256 | 418.57 | humidity | 90 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 259 | 418.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 272 | 418.86 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 278 | 419.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 281 | 419.07 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 292 | 419.28 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 22 |
| 300 | 419.40 | humidity | 80 | 720 | < th | dose independent | sin | 2 | NA |
| 310 | 419.59 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 18 |
| 352 | 420.16 | humidity | 70 | 720 | < th | dose independent | rect. | 8 | 10 |
| 371 | 420.48 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 14 |
| 435 | 421.18 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 18 |
| 437 | 421.21 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 440 | 421.23 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 12 |
| 448 | 421.33 | radiation | 1 | 720 | < th | dose independent | sin | 2 | NA |
| 508 | 421.99 | humidity | 90 | 720 | < th | dose dependent | sin | 4 | NA |
| 520 | 422.10 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 23 |
| 544 | 422.31 | radiation | 1 | 720 | > th | dose dependent | sin | 13 | NA |
| 546 | 422.32 | humidity | 90 | 270 | < th | dose dependent | sin | 17 | NA |
| 587 | 422.85 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 18 |
| 621 | 422.99 | humidity | 70 | 720 | < th | dose independent | rect. | 12 | 23 |
| 628 | 423.04 | humidity | 90 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 631 | 423.06 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 656 | 423.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 751 | 423.97 | humidity | 70 | 720 | < th | dose independent | rect. | 8 | 23 |
| 770 | 424.03 | radiation | 30 | 720 | > th | dose independent | rect. | 14 | 19 |
| 780 | 424.12 | radiation | 40 | 270 | < th | dose dependent | sin | 13 | NA |
| 814 | 424.36 | humidity | 70 | 720 | < th | dose independent | no | NA | NA |
| 876 | 424.40 | humidity | 60 | 720 | > th | dose independent | rect. | 16 | 6 |
| 939 | 424.76 | humidity | 70 | 720 | > th | dose independent | no | NA | NA |
| 948 | 424.84 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |