BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0544200 Os04g0544200|Os04g0544200
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44740.1 | chr2:18442287-18443304 REVERSE LENGTH=203 170 5e-43
AT5G07450.1 | chr5:2358418-2359253 REVERSE LENGTH=217 164 2e-41
AT5G61650.1 | chr5:24778265-24779019 FORWARD LENGTH=220 164 3e-41
AT3G05327.1 | chr3:1517581-1518399 REVERSE LENGTH=213 122 2e-28
AT3G60550.1 | chr3:22379846-22380641 FORWARD LENGTH=231 117 6e-27
AT2G45080.1 | chr2:18591688-18592443 FORWARD LENGTH=223 115 2e-26
AT3G63120.1 | chr3:23323143-23323893 REVERSE LENGTH=222 105 2e-23
AT3G21870.1 | chr3:7703927-7704813 REVERSE LENGTH=211 97 6e-21
>AT2G44740.1 | chr2:18442287-18443304 REVERSE LENGTH=203
Length = 202
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 117/176 (66%), Gaps = 7/176 (3%)
Query: 1 MAEEEDLADMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRA 60
MAE E+ + M +++ L++LLERV E ND ++P IT+++
Sbjct: 1 MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGL----SRPTITIQS 56
Query: 61 YMARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDD 120
Y+ RI ++A CSP+C+VVAY+YLD + ++S++VHRLLIT+V+ A KF+DD
Sbjct: 57 YLERIFKYANCSPSCFVVAYVYLDRFTHR---QPSLPINSFNVHRLLITSVMVAAKFLDD 113
Query: 121 ICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEMLCLE 176
+ YNNAY+AKVGG+S EMN+LE+DFLFG+GF+LNV+P TF Y + LQ EM L+
Sbjct: 114 LYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQ 169
>AT5G07450.1 | chr5:2358418-2359253 REVERSE LENGTH=217
Length = 216
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 113/172 (65%), Gaps = 8/172 (4%)
Query: 3 EEEDLAD-MPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAY 61
++E +A+ MP V+ +++LL+RV+E ND TKP I++R+Y
Sbjct: 12 DQEPMAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNA----VTKPSISIRSY 67
Query: 62 MARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDI 121
M RI ++A CS +CY+VAYIYLD +DS +VHRL+IT+VL + KFMDD+
Sbjct: 68 MERIFKYADCSDSCYIVAYIYLDRFIQKQPL---LPIDSSNVHRLIITSVLVSAKFMDDL 124
Query: 122 CYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEML 173
CYNNA++AKVGG++ EMN LE+DFLFG+GF LNV+ T+ YC+ LQ EM+
Sbjct: 125 CYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176
>AT5G61650.1 | chr5:24778265-24779019 FORWARD LENGTH=220
Length = 219
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 17/215 (7%)
Query: 4 EEDLAD-MPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYM 62
+E LA+ MP V+ ++ LL+RV+E ND TKP I++R+Y+
Sbjct: 15 QEPLAEIMPSVLTAMSYLLQRVSETNDNLSQKQKPSSFTG--------VTKPSISIRSYL 66
Query: 63 ARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDIC 122
RI +A CS +CY+VAYIYLD ++S++VHRL+IT+VL + KFMDD+
Sbjct: 67 ERIFEYANCSYSCYIVAYIYLDRFVKKQPF---LPINSFNVHRLIITSVLVSAKFMDDLS 123
Query: 123 YNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM-LCLELEXX- 180
YNN Y+AKVGG+S EMN LE+DFLFG+GF+LNV+ TF +YC LQ EM + ++++
Sbjct: 124 YNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLF 183
Query: 181 ---XXXXXXXXXRLHCFLSEDDTSSSGSTQHQLAA 212
+L + E+D+ S+ + QLAA
Sbjct: 184 LEPSSFKISSKTKLVMYPHEEDSLSTHHNKKQLAA 218
>AT3G05327.1 | chr3:1517581-1518399 REVERSE LENGTH=213
Length = 212
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 4/162 (2%)
Query: 11 PRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMARIARFAG 70
PRV+ +LA+ LE++ ++N + P +++ Y RI R+A
Sbjct: 31 PRVITLLASTLEKMIQKNKKKFHTRHNKADEITMFHG---SKAPSLSIYRYTERIHRYAQ 87
Query: 71 CSPACYVVAYIY-LDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAYFA 129
CSP C+V A+ Y L + A + S +VHRLLIT++L A KF++ CYNNAY+A
Sbjct: 88 CSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLERQCYNNAYYA 147
Query: 130 KVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSE 171
K+GGVS EMN LE FL V F L ++ ETF +C +LQ E
Sbjct: 148 KIGGVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKE 189
>AT3G60550.1 | chr3:22379846-22380641 FORWARD LENGTH=231
Length = 230
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 5 EDLADMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMAR 64
++ + P V+ VL++L++R RN+ PD+T+++Y+ R
Sbjct: 24 QNNSKTPLVISVLSSLIDRTLTRNERISRRALPSSGAGGKTQIFDCREIPDMTIQSYLGR 83
Query: 65 IARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICYN 124
I R+ P+ YVVAY+Y+D F + +VHRLLIT ++ A K+++D+ Y
Sbjct: 84 IFRYTKAGPSVYVVAYVYIDRFCQTNP---GFRISLTNVHRLLITTIMIASKYVEDLNYR 140
Query: 125 NAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM 172
N+YFAKVGG+ ++N LE++FLF +GF L+V+ F YC L+ E+
Sbjct: 141 NSYFAKVGGLETEDLNKLELEFLFLMGFKLHVNVSVFESYCCHLEREV 188
>AT2G45080.1 | chr2:18591688-18592443 FORWARD LENGTH=223
Length = 222
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 4 EEDLADMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMA 63
++D +P V+ VL++L+ER RN+ PD+T+++Y+
Sbjct: 21 QDDSNTVPLVISVLSSLIERTLARNERISRSYGGFGKTRVFDCREI----PDMTIQSYLE 76
Query: 64 RIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICY 123
RI R+ P+ YVVAY+Y+D F + +VHRLLIT ++ A K+++D+ Y
Sbjct: 77 RIFRYTKAGPSVYVVAYVYIDRFCQNNQ---GFRISLTNVHRLLITTIMIASKYVEDMNY 133
Query: 124 NNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM 172
N+YFAKVGG+ ++N LE++FLF +GF L+V+ F YC L+ E+
Sbjct: 134 KNSYFAKVGGLETEDLNNLELEFLFLMGFKLHVNVSVFESYCCHLEREV 182
>AT3G63120.1 | chr3:23323143-23323893 REVERSE LENGTH=222
Length = 221
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 4/120 (3%)
Query: 52 TKPDITVRAYMARIARFAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAV 111
+ P+I++ Y+ RI +++ CSP+C+V+A+IY+D + +VHRL+IT V
Sbjct: 69 SPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRAL----LKPLNVHRLIITTV 124
Query: 112 LAAVKFMDDICYNNAYFAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSE 171
+ A K DD +NNAY+A+VGGV+ E+N LE++ LF + F L V P+TF +C L+ +
Sbjct: 125 MLAAKVFDDRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ 184
>AT3G21870.1 | chr3:7703927-7704813 REVERSE LENGTH=211
Length = 210
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 6/165 (3%)
Query: 8 ADMPRVVGVLAALLERVTERNDXXXXXXXXXXXXXXXXXXXXXTTKPDITVRAYMARIAR 67
A PRV+ +++ ++E++ RN+ P I++ Y+ RI +
Sbjct: 22 AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHG---VRAPSISIAKYLERIYK 78
Query: 68 FAGCSPACYVVAYIYLDXXXXXXXXACAFSVDSYSVHRLLITAVLAAVKFMDDICYNNAY 127
+ CSPAC+VV Y+Y+D + S++ VHRLL+T V+ A K +DD+ YNN +
Sbjct: 79 YTKCSPACFVVGYVYIDRLAHKHPGSLVVSLN---VHRLLVTCVMIAAKILDDVHYNNEF 135
Query: 128 FAKVGGVSLPEMNYLEVDFLFGVGFDLNVSPETFGHYCAVLQSEM 172
+A+VGGVS ++N +E++ LF + F + VS F YC L+ EM
Sbjct: 136 YARVGGVSNADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEM 180
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,537,282
Number of extensions: 108176
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 8
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)