Os02g0125400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like domain containing protein.
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Os02g0125400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 582.07 | 1.13 | 3.79 | -2.8 | 0.0863 | 3.98 | -1.09 | -12.7 | -0.374 | 16.1 | 0.9584 | 90 | 3.95 | 0.609 |
| 591.05 | 1.13 | 3.76 | -2.23 | 0.00959 | 2.79 | 0.934 | -- | -0.371 | 3.65 | 0.9868 | 78 | 4.02 | 0.783 |
| 583.73 | 1.13 | 3.79 | -2.77 | 0.0969 | 3.85 | -- | -11.1 | -0.371 | 16.4 | 0.9996 | 92 | 3.96 | 0.586 |
| 590.14 | 1.13 | 3.74 | -2.24 | 0.0131 | 2.7 | -- | -- | -0.395 | 3.06 | 0.8025 | 82 | 3.93 | 0.75 |
| 583.09 | 1.12 | 3.79 | -2.79 | -- | 3.81 | -- | -11.4 | -0.383 | -- | 1.098 | 93 | 3.98 | 0.534 |
| 676.09 | 1.22 | 3.76 | -2.18 | 0.382 | -- | 1.73 | -- | -0.499 | 4.69 | -- | -- | -- | -- |
| 683.89 | 1.22 | 3.76 | -2.19 | 0.396 | -- | -- | -- | -0.508 | 4.95 | -- | -- | -- | -- |
| 589 | 1.13 | 3.74 | -2.32 | -- | 2.65 | -- | -- | -0.385 | -- | 0.8056 | 86 | 3.91 | 0.723 |
| 727.6 | 1.26 | 3.68 | -- | 0.025 | 2.54 | -- | -- | -0.188 | 16.5 | 0.8 | 91 | 3.88 | 0.683 |
| 692.14 | 1.23 | 3.76 | -2.18 | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
| 810.45 | 1.33 | 3.71 | -- | 0.357 | -- | -- | -- | -0.264 | 5.15 | -- | -- | -- | -- |
| 726.52 | 1.26 | 3.68 | -- | -- | 2.35 | -- | -- | -0.134 | -- | 0.8185 | 92 | 3.89 | 0.639 |
| 817.14 | 1.33 | 3.71 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 594.88 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 2 | 596.82 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 597.67 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 32 | 603.06 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 33 | 603.35 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 34 | 605.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 35 | 608.14 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 47 | 608.77 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 62 | 609.59 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 66 | 610.79 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 81 | 610.86 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 154 | 617.55 | humidity | 90 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 187 | 618.27 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 190 | 618.68 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 211 | 619.82 | humidity | 90 | 90 | > th | dose independent | rect. | 4 | 1 |
| 214 | 619.94 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 234 | 622.22 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 8 |
| 266 | 622.76 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 4 | 1 |
| 294 | 623.36 | wind | 3 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 303 | 623.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 312 | 624.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 313 | 624.35 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 314 | 624.44 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 378 | 625.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 387 | 625.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 503 | 626.60 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 533 | 626.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 564 | 626.79 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 646 | 627.60 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 671 | 627.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 724 | 628.62 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 725 | 628.63 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 739 | 628.78 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 782 | 629.48 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 868 | 630.03 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 900 | 630.31 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 901 | 630.32 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 4 | 5 |