BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0125400 Os02g0125400|Os02g0125400
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0125400  Cyclin-like domain containing protein               124   2e-29
Os04g0544200  Negative regulatory factor PREG family protein       77   3e-15
Os10g0563900  Negative regulatory factor PREG family protein       77   6e-15
Os02g0652000  PREG-like protein                                    73   8e-14

>Os02g0125400 Cyclin-like domain containing protein
          Length = 142

 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 75/142 (52%)

Query: 1   MERTTTRRTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT 60
           MERTTTRRTSS                                                T
Sbjct: 1   MERTTTRRTSSKGAAAAPAPKVVAVLAGLLERAAARGDADADARGGSAAAAAATAFRGRT 60

Query: 61  RPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRXXXXXXXXXXXXXXXXXXXVCVD 120
           RPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGR                   VCVD
Sbjct: 61  RPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRSPEEESSPSPSPPATAAAAVCVD 120

Query: 121 SYSVHRLLITSVMVAAKFMDDM 142
           SYSVHRLLITSVMVAAKFMDDM
Sbjct: 121 SYSVHRLLITSVMVAAKFMDDM 142



>Os04g0544200 Negative regulatory factor PREG family protein
          Length = 212

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 53/83 (63%), Gaps = 13/83 (15%)

Query: 60  TRPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRXXXXXXXXXXXXXXXXXXXVCV 119
           T+P+I+VR Y  RI R+AGCSPAC+VVA +YLDRL  R                     V
Sbjct: 52  TKPDITVRAYMARIARFAGCSPACYVVAYIYLDRLLRRRRRACAFS-------------V 98

Query: 120 DSYSVHRLLITSVMVAAKFMDDM 142
           DSYSVHRLLIT+V+ A KFMDD+
Sbjct: 99  DSYSVHRLLITAVLAAVKFMDDI 121



>Os10g0563900 Negative regulatory factor PREG family protein
          Length = 212

 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 16/83 (19%)

Query: 60  TRPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRXXXXXXXXXXXXXXXXXXXVCV 119
           T+P IS+  Y ERI+R+A CSP+C+VVA +YLDR   R                   + V
Sbjct: 51  TKPAISIGGYLERIFRFANCSPSCYVVAYIYLDRFLRR----------------RPALAV 94

Query: 120 DSYSVHRLLITSVMVAAKFMDDM 142
           DS++VHRLLITSV+ A KF+DD+
Sbjct: 95  DSFNVHRLLITSVLTAVKFVDDI 117



>Os02g0652000 PREG-like protein
          Length = 212

 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 48/83 (57%), Gaps = 11/83 (13%)

Query: 60  TRPEISVRRYAERIYRYAGCSPACFVVARVYLDRLAGRXXXXXXXXXXXXXXXXXXXVCV 119
            +P ISVR YA RI R+AGCSPAC+VVA +Y                          + V
Sbjct: 55  AKPGISVRAYAARIARFAGCSPACYVVAYIY-----------LDRLLRRGRRCLALALAV 103

Query: 120 DSYSVHRLLITSVMVAAKFMDDM 142
           DSYSVHRLLIT+V+ A KFMDD+
Sbjct: 104 DSYSVHRLLITAVLSAVKFMDDI 126



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,015,346
Number of extensions: 35587
Number of successful extensions: 61
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 4
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 151 (62.8 bits)