Os02g0652000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PREG-like protein.
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Os02g0652000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PREG-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.79 | 0.571 | 10.2 | -0.62 | 2.2 | -1.18 | 1.64 | -0.0801 | -0.365 | 5.28 | 25.41 | 10 | -- | -- |
| 147.8 | 0.566 | 10.2 | -0.631 | 2.2 | -1.18 | 1.62 | -- | -0.368 | 5.28 | 25.44 | 10 | -- | -- |
| 154.04 | 0.578 | 10.3 | -0.694 | 2.2 | -1.13 | -- | 0.45 | -0.387 | 5.29 | 25.44 | 10 | -- | -- |
| 154.37 | 0.579 | 10.2 | -0.627 | 2.2 | -1.17 | -- | -- | -0.366 | 5.29 | 25.2 | 10 | -- | -- |
| 392.52 | 0.928 | 10.2 | -0.373 | -- | -0.0621 | -- | 2.73 | -0.11 | -- | 17.5 | 13 | -- | -- |
| 168.59 | 0.609 | 10.2 | -0.362 | 2.07 | -- | 1.57 | -- | -0.125 | 5.66 | -- | -- | -- | -- |
| 174.67 | 0.619 | 10.2 | -0.354 | 2.08 | -- | -- | -- | -0.131 | 5.67 | -- | -- | -- | -- |
| 392.08 | 0.922 | 10.2 | -0.432 | -- | -0.621 | -- | -- | -0.16 | -- | 23.75 | 8 | -- | -- |
| 163.83 | 0.596 | 10.2 | -- | 2.17 | -0.955 | -- | -- | -0.262 | 5.37 | 25.2 | 10 | -- | -- |
| 398.74 | 0.933 | 10.2 | -0.287 | -- | -- | -- | -- | -0.0815 | -- | -- | -- | -- | -- |
| 177.96 | 0.624 | 10.2 | -- | 2.07 | -- | -- | -- | -0.0918 | 5.67 | -- | -- | -- | -- |
| 396.46 | 0.93 | 10.2 | -- | -- | -0.513 | -- | -- | -0.116 | -- | 23.9 | 9 | -- | -- |
| 400.92 | 0.935 | 10.2 | -- | -- | -- | -- | -- | -0.0496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.98 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 2 | 142.16 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 3 | 142.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 4 | 142.48 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 9 | 142.51 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 47 | 142.72 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 48 | 142.76 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 49 | 142.76 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 50 | 142.82 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 60 | 143.12 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 100 | 143.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 105 | 143.42 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 129 | 143.55 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 138 | 143.60 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 150 | 143.74 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 154 | 143.77 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 156 | 143.78 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 158 | 143.80 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 163 | 143.84 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 168 | 143.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 169 | 143.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 171 | 143.90 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 180 | 144.04 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 182 | 144.05 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 188 | 144.16 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 7 |
| 189 | 144.16 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 190 | 144.18 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 225 | 144.35 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 251 | 144.39 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 256 | 144.40 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 272 | 144.50 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 295 | 144.63 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 325 | 144.81 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 327 | 144.86 | wind | 5.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 332 | 144.91 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 362 | 145.10 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 366 | 145.10 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 370 | 145.13 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 373 | 145.14 | wind | 7.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 375 | 145.15 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 381 | 145.19 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 385 | 145.21 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 396 | 145.28 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 398 | 145.28 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 408 | 145.34 | wind | 7.0 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 419 | 145.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 441 | 145.50 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 490 | 145.68 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 508 | 145.78 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 531 | 145.83 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 540 | 145.87 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 561 | 145.92 | wind | 9.0 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 578 | 145.96 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 594 | 146.06 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 596 | 146.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 599 | 146.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 616 | 146.15 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 641 | 146.24 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 661 | 146.32 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 678 | 146.39 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 679 | 146.39 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 691 | 146.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 693 | 146.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 707 | 146.51 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 761 | 146.68 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 857 | 146.90 | wind | 5.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 898 | 147.00 | wind | 5.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 908 | 147.02 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 988 | 147.21 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 11 |