BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0510600 Os04g0510600|AK107251
(277 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0510600 Tetratricopeptide-like helical domain containi... 360 e-100
Os03g0140700 Tetratricopeptide-like helical domain containi... 162 2e-40
Os10g0576600 Tetratricopeptide region domain containing pro... 107 1e-23
Os06g0606700 Tetratricopeptide-like helical domain containi... 99 3e-21
Os01g0855200 Tetratricopeptide-like helical domain containi... 89 3e-18
Os05g0447700 Ferritin/ribonucleotide reductase-like family ... 77 1e-14
Os07g0542850 70 2e-12
Os10g0501900 Helix-turn-helix, Fis-type domain containing p... 69 5e-12
Os04g0496700 Tetratricopeptide-like helical domain containi... 67 1e-11
>Os04g0510600 Tetratricopeptide-like helical domain containing protein
Length = 277
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/250 (74%), Positives = 185/250 (74%)
Query: 28 QLRRAFSDGHLPSLHPSSDGGGGSKNNTTGLHTELSFSIYNTFNKMXXXXXXXXXXXXXX 87
QLRRAFSDGHLPSLHPSSDGGGGSKNNTTGLHTELSFSIYNTFNKM
Sbjct: 28 QLRRAFSDGHLPSLHPSSDGGGGSKNNTTGLHTELSFSIYNTFNKMAPPPPPVQEQEEAE 87
Query: 88 XXXXXXXXKLPLFLARGLGIDRIASGLFTXXXXXXXXXXXXXXXRMSXXXXXXXXXXXXL 147
KLPLFLARGLGIDRIASGLFT RMS L
Sbjct: 88 QQQAPGEPKLPLFLARGLGIDRIASGLFTAGGGGDGDGGNGGAGRMSAVEEEHAEKVAAL 147
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV
Sbjct: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLWXXXXXXXXXXXXXXXXVAVAAQPG 267
WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW VAVAAQPG
Sbjct: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLWEQDDDDNDDLGEGEQDVAVAAQPG 267
Query: 268 HVRQLASVAV 277
HVRQLASVAV
Sbjct: 268 HVRQLASVAV 277
>Os03g0140700 Tetratricopeptide-like helical domain containing protein
Length = 339
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 104/148 (70%), Gaps = 2/148 (1%)
Query: 98 PLFLARGLGIDRIASGLFTXXXXXXXXXXXXXXXRMSXXXXXXXXXXXXLDAQ--YKRMM 155
PLFLARGLGIDR+ SGL + D + YK+M+
Sbjct: 157 PLFLARGLGIDRLGSGLLSADGGSGGSDGGGGGGAGGSYLVTSDNGGNRSDIEMHYKKMI 216
Query: 156 DEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEVHRDLD 215
+E P + LFLRNYAQFL+++KGD+R+AEEYYSRA+LADP+DGE++S+YAKLVW+VHRD D
Sbjct: 217 EEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDED 276
Query: 216 RSLTYFHKSVQAAPHNSNVLAAYASFLW 243
R+ +YF ++ +A+P NS+VLAA+A+FLW
Sbjct: 277 RASSYFERAARASPQNSHVLAAHAAFLW 304
>Os10g0576600 Tetratricopeptide region domain containing protein
Length = 227
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
Y+R++ +P + L LRNY ++L EV+GD AEE Y+RA+LA P DG+++S Y +L+WE
Sbjct: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
+D DR+ Y ++VQAAP + VL +YASFLW
Sbjct: 172 SQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
>Os06g0606700 Tetratricopeptide-like helical domain containing protein
Length = 236
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
DA Y+RM+ P + L L NYA+FL EV+GDA RA+EY RA++A+P DG+ ++ YA LV
Sbjct: 152 DAHYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALYAGLV 211
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHN 231
WE RD DR+ YF ++V AAP +
Sbjct: 212 WETTRDADRADAYFTRAVHAAPDD 235
>Os01g0855200 Tetratricopeptide-like helical domain containing protein
Length = 512
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
+ +Y+R + E+P ++L L N+AQFL+ V+ D RAE Y+ RA+ A+P+D E M +YA +
Sbjct: 405 EERYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFL 464
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
W+ DL + + +++ A P NS+ AAYA FLW
Sbjct: 465 WKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLW 500
>Os05g0447700 Ferritin/ribonucleotide reductase-like family protein
Length = 484
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
+ +Y+ + E+P + L L N+AQFL+ V+ D RAE+Y+ RA+ A+P+D E +S+YA +
Sbjct: 377 EQRYELAVSEEPNNPLILANFAQFLYLVQNDHDRAEQYFERAVRAEPADAEALSRYATFL 436
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
W+ DL + + +++ A P N++ AAYA FLW
Sbjct: 437 WKARNDLAAAEDTYQEAIAADPGNAHHAAAYAHFLW 472
>Os07g0542850
Length = 371
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%)
Query: 159 PGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEVHRDLDRSL 218
P + L L NYA+FL +V+ DA RA+EY A++A+P DG+ ++ YA LVWE RD DR+
Sbjct: 286 PTNPLLLGNYARFLKKVERDAARAQEYCEHAIVANPGDGDALALYAGLVWETTRDTDRTD 345
Query: 219 TYF 221
YF
Sbjct: 346 AYF 348
>Os10g0501900 Helix-turn-helix, Fis-type domain containing protein
Length = 363
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 161 DALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEVHRDLDRSLTY 220
++L L NYAQ L++ D RAE+Y+ +A+ A+P DGE M +YA +W DL +
Sbjct: 264 NSLILSNYAQLLYQFDKDLDRAEDYFKQAVAAEPVDGEAMRRYALFMWHARGDLAGAEDM 323
Query: 221 FHKSVQAAPHNSNVLAAYASFLW 243
F +++ P +S ++YA FLW
Sbjct: 324 FTRAIDEEPQSSQHRSSYAWFLW 346
>Os04g0496700 Tetratricopeptide-like helical domain containing protein
Length = 113
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKL 206
+A Y+RM+ P + L L NYA+FL EV+GDA RA+EY+ RA++A+P DG+ ++ YA L
Sbjct: 40 NAYYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYWERAIVANPGDGDALALYAGL 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,460,353
Number of extensions: 203252
Number of successful extensions: 600
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 9
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)