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Os04g0510600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0222) R2 : 0.0258
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.0468) R2dN8 : 0.0333 R2N8 : 0.0258
σ : 0.419
deviance : 80.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.25 0.377 11.1 0.198 1.12 -0.92 0.719 -1.07 -0.192 0.314 9.205e-06 103 -- --
67.59 0.383 11.1 0.231 1.18 -0.939 -0.167 -- -0.092 0.0204 2.228e-05 96 -- --
64.06 0.373 11.1 0.16 1.1 -0.904 -- -0.504 -0.207 0.361 0.0001196 111 -- --
65.54 0.377 11.1 0.146 1.11 -0.915 -- -- -0.203 0.325 0.005525 111 -- --
75.64 0.405 11.1 0.191 -- 0.126 -- -0.793 -0.147 -- 20 218 -- --
77.11 0.412 11.1 0.216 0.0455 -- 0.795 -- -0.141 15.7 -- -- -- --
78.13 0.414 11.1 0.227 0.136 -- -- -- -0.136 20 -- -- -- --
77.1 0.409 11.1 0.236 -- 0.198 -- -- -0.126 -- 40 130 -- --
66.06 0.379 11.1 -- 1.1 -0.917 -- -- -0.202 0.343 6.456e-07 113 -- --
79.14 0.416 11.1 0.225 -- -- -- -- -0.138 -- -- -- -- --
79.49 0.417 11.1 -- 0.135 -- -- -- -0.161 20.1 -- -- -- --
77.1 0.409 11.1 -- -- -0.418 -- -- -0.219 -- 0.03999 1177 -- --
80.48 0.419 11.1 -- -- -- -- -- -0.163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.87 radiation 1.0 90 < th dose dependent sin 9 NA
3 53.20 temperature 20.0 90 > th dose independent rect. 5 4
4 53.37 temperature 20.0 270 > th dose dependent rect. 5 1
5 54.32 temperature 20.0 270 > th dose independent rect. 5 1
9 54.86 temperature 20.0 90 > th dose dependent rect. 5 3
10 54.87 radiation 1.0 90 < th dose independent sin 9 NA
19 55.84 radiation 10.0 270 < th dose independent rect. 5 2
22 55.98 radiation 1.0 90 > th dose independent sin 9 NA
23 56.08 radiation 10.0 90 < th dose independent rect. 5 21
31 56.77 temperature 20.0 90 > th dose independent rect. 5 16
41 57.69 radiation 20.0 90 < th dose independent rect. 5 4
44 58.00 radiation 1.0 90 > th dose independent rect. 18 15
45 58.01 humidity 50.0 90 > th dose dependent rect. 5 4
47 58.09 radiation 20.0 90 < th dose dependent rect. 5 21
49 58.14 humidity 80.0 90 > th dose independent rect. 5 4
52 58.17 temperature 20.0 90 > th dose independent rect. 5 18
57 58.22 humidity 50.0 90 > th dose dependent rect. 5 6
65 58.43 radiation 1.0 90 > th dose independent rect. 5 4
77 58.45 temperature 20.0 30 > th dose independent rect. 5 21
83 58.53 precipitation 0.1 90 < th dose independent rect. 9 20
84 58.53 precipitation 0.1 90 < th dose dependent rect. 9 20
86 58.56 radiation 40.0 90 < th dose dependent rect. 5 5
89 58.59 humidity 70.0 90 > th dose independent rect. 6 1
91 58.61 radiation 40.0 90 < th dose dependent rect. 6 1
95 58.72 radiation 10.0 10 < th dose independent rect. 6 20
98 58.78 radiation 40.0 10 < th dose dependent rect. 6 4
101 58.83 precipitation 0.1 90 < th dose independent rect. 6 1
102 58.83 humidity 50.0 90 > th dose dependent rect. 6 1
103 58.83 precipitation 0.1 90 < th dose dependent rect. 6 1
104 58.84 wind 7.0 90 < th dose independent rect. 6 1
106 58.84 temperature 10.0 90 > th dose independent rect. 6 1
108 58.84 temperature 30.0 90 < th dose independent rect. 6 1
109 58.84 humidity 50.0 90 > th dose independent rect. 6 1
111 58.84 atmosphere 995.0 90 > th dose independent rect. 6 1
112 58.84 atmosphere 1015.0 90 < th dose independent rect. 6 1
114 58.84 temperature 10.0 90 > th dose independent rect. 7 23
127 58.99 wind 9.0 90 < th dose dependent rect. 5 4
132 59.09 wind 9.0 90 < th dose dependent rect. 6 1
133 59.10 precipitation 0.1 90 < th dose independent rect. 5 4
134 59.10 precipitation 0.1 90 < th dose dependent rect. 5 4
135 59.11 wind 9.0 90 < th dose independent rect. 5 4
136 59.11 temperature 10.0 90 > th dose independent rect. 5 4
139 59.11 atmosphere 995.0 90 > th dose independent rect. 5 4
140 59.11 atmosphere 1015.0 90 < th dose independent rect. 5 4
141 59.11 temperature 10.0 90 > th dose independent rect. 9 20
144 59.14 temperature 30.0 90 < th dose independent rect. 5 4
167 59.45 radiation 10.0 10 < th dose independent rect. 6 4
170 59.46 wind 9.0 90 < th dose independent rect. 9 20
171 59.50 wind 3.0 90 < th dose independent rect. 5 4
175 59.54 radiation 1.0 90 > th dose independent rect. 6 1
177 59.55 wind 3.0 10 < th dose independent rect. 6 3
179 59.59 humidity 50.0 10 > th dose dependent rect. 6 4
180 59.62 precipitation 0.1 90 < th dose independent rect. 7 23
182 59.62 precipitation 0.1 90 < th dose dependent rect. 7 23
185 59.64 wind 1.0 90 > th dose independent rect. 6 1
191 59.69 radiation 20.0 10 < th dose dependent rect. 6 20
194 59.70 radiation 1.0 90 < th dose dependent rect. 21 10
199 59.74 wind 9.0 90 < th dose independent rect. 7 23
200 59.75 atmosphere 995.0 90 > th dose dependent rect. 6 1
229 59.95 radiation 1.0 90 < th dose dependent rect. 21 13
255 60.16 wind 1.0 270 > th dose independent rect. 7 21
262 60.21 radiation 1.0 90 < th dose independent rect. 21 9
324 60.62 wind 7.0 10 < th dose dependent rect. 6 3
327 60.66 humidity 70.0 10 > th dose independent rect. 6 4
332 60.69 radiation 1.0 90 < th dose dependent rect. 19 12
334 60.71 radiation 10.0 10 < th dose independent rect. 6 2
336 60.72 radiation 1.0 90 < th dose dependent rect. 23 8
345 60.79 atmosphere 995.0 90 > th dose dependent rect. 5 4
365 60.90 precipitation 0.1 90 < th dose independent rect. 19 10
366 60.90 precipitation 0.1 90 < th dose dependent rect. 19 10
368 60.91 wind 7.0 90 < th dose independent rect. 21 8
381 60.97 radiation 1.0 90 < th dose dependent rect. 23 11
382 60.98 precipitation 0.1 90 < th dose independent rect. 21 8
384 60.98 precipitation 0.1 90 < th dose dependent rect. 21 8
400 61.07 wind 1.0 270 > th dose independent rect. 4 3
420 61.14 temperature 30.0 90 < th dose dependent rect. 23 6
428 61.18 humidity 70.0 90 > th dose dependent rect. 5 21
435 61.21 temperature 20.0 270 > th dose independent rect. 16 16
467 61.30 radiation 1.0 90 < th dose independent rect. 19 11
472 61.31 radiation 10.0 270 < th dose independent rect. 3 21
474 61.32 temperature 20.0 270 > th dose independent rect. 3 20
483 61.36 radiation 1.0 90 < th dose independent rect. 23 7
497 61.38 precipitation 0.1 10 < th dose independent rect. 6 2
498 61.38 precipitation 0.1 10 < th dose dependent rect. 6 2
501 61.39 wind 5.0 90 < th dose independent rect. 23 6
509 61.42 wind 7.0 10 < th dose independent rect. 6 2
511 61.42 temperature 10.0 10 > th dose independent rect. 6 2
513 61.42 temperature 30.0 10 < th dose independent rect. 6 2
514 61.42 humidity 50.0 10 > th dose independent rect. 6 2
516 61.42 atmosphere 995.0 10 > th dose independent rect. 6 2
517 61.42 atmosphere 1015.0 10 < th dose independent rect. 6 2
527 61.42 temperature 10.0 10 > th dose independent rect. 9 21
536 61.45 wind 9.0 90 < th dose independent rect. 5 16
541 61.46 temperature 10.0 90 > th dose independent rect. 21 8
542 61.46 temperature 30.0 90 < th dose independent rect. 21 8
543 61.46 humidity 50.0 90 > th dose independent rect. 21 8
546 61.46 atmosphere 995.0 90 > th dose independent rect. 21 8
547 61.46 radiation 20.0 90 < th dose independent rect. 21 8
550 61.46 temperature 10.0 90 > th dose independent rect. 5 16
551 61.46 atmosphere 1015.0 90 < th dose independent rect. 5 16
553 61.46 radiation 40.0 90 < th dose dependent rect. 21 8
555 61.47 atmosphere 995.0 90 > th dose independent rect. 9 20
558 61.47 radiation 20.0 90 < th dose dependent rect. 21 8
574 61.52 precipitation 0.1 90 < th dose independent rect. 23 6
577 61.52 precipitation 0.1 90 < th dose dependent rect. 23 6
579 61.53 humidity 50.0 14400 > th dose independent rect. 7 2
585 61.56 radiation 1.0 90 < th dose independent rect. 21 13
590 61.57 wind 1.0 270 > th dose independent rect. 23 4
592 61.58 humidity 90.0 90 < th dose independent rect. 6 1
597 61.59 atmosphere 995.0 10 > th dose dependent rect. 6 2
627 61.71 radiation 1.0 10 > th dose independent rect. 6 3
654 61.77 wind 9.0 10 < th dose independent rect. 9 21
673 61.82 atmosphere 1015.0 90 < th dose dependent rect. 6 1
691 61.87 radiation 10.0 270 < th dose independent rect. 14 18
696 61.89 temperature 10.0 270 > th dose dependent rect. 17 14
698 61.90 radiation 10.0 90 < th dose independent rect. 5 16
707 61.92 temperature 10.0 90 > th dose independent rect. 23 6
708 61.92 temperature 30.0 90 < th dose independent rect. 23 6
709 61.92 humidity 50.0 90 > th dose independent rect. 23 6
712 61.92 atmosphere 995.0 90 > th dose independent rect. 23 6
713 61.92 radiation 20.0 90 < th dose independent rect. 23 6
716 61.92 temperature 10.0 90 > th dose independent rect. 5 18
717 61.92 radiation 20.0 90 < th dose dependent rect. 23 6
722 61.93 wind 9.0 90 < th dose independent rect. 5 18
726 61.94 wind 1.0 10 > th dose independent rect. 6 2
753 62.01 humidity 70.0 90 > th dose independent rect. 19 10
760 62.02 atmosphere 1015.0 90 < th dose independent rect. 5 18
777 62.08 temperature 10.0 1440 > th dose independent rect. 7 3
780 62.08 atmosphere 995.0 1440 > th dose independent rect. 7 3
781 62.08 atmosphere 1015.0 1440 < th dose independent rect. 7 3
784 62.08 temperature 10.0 1440 > th dose independent rect. 10 21
794 62.12 radiation 1.0 270 > th dose independent rect. 7 10
797 62.13 radiation 10.0 10 < th dose independent rect. 6 10
821 62.18 radiation 10.0 10 < th dose dependent rect. 20 10
835 62.26 wind 9.0 90 < th dose independent rect. 5 14
836 62.26 temperature 30.0 90 < th dose dependent rect. 1 4
837 62.26 temperature 30.0 270 < th dose dependent rect. 23 4
851 62.32 radiation 10.0 90 < th dose independent rect. 5 8
856 62.33 atmosphere 995.0 90 > th dose independent rect. 5 16
871 62.36 humidity 80.0 90 > th dose independent rect. 5 14
876 62.38 wind 9.0 90 < th dose dependent rect. 5 14
880 62.41 temperature 10.0 90 > th dose independent rect. 19 10
881 62.41 temperature 30.0 90 < th dose independent rect. 19 10
882 62.41 humidity 50.0 90 > th dose independent rect. 19 10
884 62.41 atmosphere 995.0 90 > th dose independent rect. 19 10
885 62.41 radiation 20.0 90 < th dose independent rect. 19 10
888 62.41 humidity 80.0 90 > th dose independent rect. 5 12
889 62.41 temperature 10.0 90 > th dose independent rect. 5 14
890 62.41 atmosphere 1015.0 90 < th dose independent rect. 5 14
892 62.41 radiation 20.0 90 < th dose dependent rect. 19 10
921 62.45 atmosphere 1015.0 10 < th dose dependent rect. 6 1
925 62.46 atmosphere 1015.0 90 < th dose independent rect. 9 20
927 62.46 radiation 1.0 90 > th dose dependent rect. 18 13
944 62.48 wind 1.0 270 > th dose independent rect. 21 7
960 62.53 precipitation 0.1 90 < th dose independent rect. 11 18
963 62.53 precipitation 0.1 90 < th dose dependent rect. 11 18
964 62.54 wind 1.0 90 > th dose dependent rect. 6 1
974 62.57 wind 9.0 1440 < th dose independent rect. 7 2
979 62.57 humidity 50.0 1440 > th dose independent rect. 7 2
989 62.58 radiation 1.0 90 < th dose independent rect. 23 11
997 62.61 radiation 1.0 90 > th dose dependent rect. 5 2