BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0510600 Os04g0510600|AK107251
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291 112 2e-25
AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239 110 6e-25
AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275 105 2e-23
AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306 100 1e-21
AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311 99 2e-21
AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537 82 4e-16
AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553 81 7e-16
AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516 72 4e-13
>AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291
Length = 290
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
D Y++M++ PG+ +FL NYA+FL EV+ D +AEEY RA+L P+DG +++ YA+LV
Sbjct: 157 DVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELV 216
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
W++H+D R+ YF+++V AAP + V A+YA FLW
Sbjct: 217 WKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 185 YYSRAMLADPSDGEIMSQYAKLVWEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLWX 244
+Y + + A+P +G +S YAK + EV +D ++ Y +++ +P++ NVLA YA +W
Sbjct: 159 HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK 218
Query: 245 XXXXXXXXXXXXXXXVAVAAQPGHVR 270
VA A + +V+
Sbjct: 219 IHKDSSRAENYFNQAVAAAPEDCYVQ 244
>AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239
Length = 238
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Query: 147 LDAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPS-DGEIMSQYAK 205
+D Y+ M+ PGD L L NYA+FL EVKGD R+AEEY RAML++ DGE++S Y
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169
Query: 206 LVWEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
L+W+ H D R+ +Y+ ++VQ++P + NVLA+YA FLW
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207
>AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275
Length = 274
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
Y+ M+ P ++L L NY +FL+EV+ DA AEEYY RA+L +P DGE +S Y +L+WE
Sbjct: 154 YREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWET 213
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
RD R+ YF ++V A+P++ VL +YA F+W
Sbjct: 214 KRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246
>AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306
Length = 305
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 66/96 (68%)
Query: 148 DAQYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLV 207
D Y+ M+D PG++L NYA+FL EVKGD ++AEEY RA+L + +DG ++S YA L+
Sbjct: 166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225
Query: 208 WEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
H+D R+ +Y+ ++V+ +P + V A+YA FLW
Sbjct: 226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261
>AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311
Length = 310
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
YK M++E P L L+NYA+FL E KGD AEEYY + + +PSDG ++ Y +LV ++
Sbjct: 125 YKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMKL 183
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
H+D ++++YF ++VQA+P +S VLAAYASFLW
Sbjct: 184 HQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 20/113 (17%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKG--------------DARRAEEYYS------RAM 190
++R + P D++ L YA FL E+ + +E+ + ++
Sbjct: 194 FERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKSS 253
Query: 191 LADPSDGEIMSQYAKLVWEVHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
L+ DGE + +YAK W ++ D +++L YF K+V+A+P++S +L YA FLW
Sbjct: 254 LSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLW 306
>AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537
Length = 536
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
Y+ + ++P + L L NYAQFL+ V D RAEEY+ RA+ +P D E S+YA +W
Sbjct: 424 YQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFLWRA 483
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
DL + F +++ A P NS A YA+FLW
Sbjct: 484 RDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516
>AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553
Length = 552
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 58/93 (62%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
Y+ + ++PG+ L L NYAQFL+ + D RAE+Y+ RA A+P+D E +++YA +W
Sbjct: 439 YQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRA 498
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
D+ R+ + +++ A P NS A YA FLW
Sbjct: 499 RNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
+KR +P DA L YA FL + D RAEE Y A+ ADP++ + YA +W
Sbjct: 474 FKRAAKAEPADAEALNKYATFLWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNT 533
Query: 211 HRD 213
D
Sbjct: 534 GGD 536
>AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516
Length = 515
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%)
Query: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
YK + ++P + L L NYAQFL+ V D RAE + +A+ ++ D E S+YA +W+V
Sbjct: 404 YKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFLWKV 463
Query: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
DL + F +++ A P NS A YA+FLW
Sbjct: 464 RNDLWAAEENFLEAISADPTNSFYAANYANFLW 496
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,877,964
Number of extensions: 116746
Number of successful extensions: 366
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 13
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)