Os03g0140700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0140700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.35 | 0.402 | 14.6 | -0.296 | 1.2 | 0.946 | 0.111 | 3.16 | -0.441 | 0.422 | 30 | 390 | -- | -- |
| 83.02 | 0.424 | 14.6 | 0.273 | 1.3 | 0.949 | 0.311 | -- | -0.336 | 0.561 | 36.33 | 532 | -- | -- |
| 73.39 | 0.399 | 14.6 | -0.303 | 1.2 | 0.949 | -- | 3.19 | -0.441 | 0.401 | 29.94 | 385 | -- | -- |
| 83.18 | 0.425 | 14.6 | 0.274 | 1.28 | 0.977 | -- | -- | -0.314 | 0.464 | 31.99 | 499 | -- | -- |
| 130.07 | 0.531 | 14.5 | 0.0815 | -- | 1.79 | -- | 2.25 | -0.271 | -- | 31.4 | 3 | -- | -- |
| 93.34 | 0.453 | 14.6 | 0.0581 | 1.29 | -- | 0.592 | -- | -0.476 | 1.37 | -- | -- | -- | -- |
| 94.67 | 0.456 | 14.6 | 0.0387 | 1.29 | -- | -- | -- | -0.478 | 1.25 | -- | -- | -- | -- |
| 136.23 | 0.544 | 14.5 | 0.465 | -- | 2.07 | -- | -- | -0.175 | -- | 45.28 | 2 | -- | -- |
| 84.91 | 0.429 | 14.6 | -- | 1.28 | 0.85 | -- | -- | -0.371 | 0.564 | 32.3 | 492 | -- | -- |
| 197.92 | 0.657 | 14.6 | 0.0889 | -- | -- | -- | -- | -0.452 | -- | -- | -- | -- | -- |
| 94.71 | 0.455 | 14.6 | -- | 1.29 | -- | -- | -- | -0.483 | 1.25 | -- | -- | -- | -- |
| 141.6 | 0.554 | 14.5 | -- | -- | 1.92 | -- | -- | -0.243 | -- | 69.38 | 2 | -- | -- |
| 198.13 | 0.657 | 14.6 | -- | -- | -- | -- | -- | -0.462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 19 | 66.67 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 22 | 66.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 106 | 69.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 108 | 70.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 20 |
| 135 | 70.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 238 | 71.61 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 250 | 71.71 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 272 | 71.90 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 281 | 71.99 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 340 | 72.31 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 348 | 72.37 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 351 | 72.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 402 | 72.64 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 452 | 72.88 | temperature | 20 | 720 | > th | dose independent | sin | 2 | NA |
| 457 | 72.91 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 470 | 72.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 504 | 73.13 | radiation | 40 | 270 | < th | dose independent | rect. | 21 | 16 |
| 553 | 73.34 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 564 | 73.37 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 665 | 73.72 | radiation | 40 | 270 | < th | dose independent | rect. | 18 | 21 |
| 669 | 73.74 | radiation | 40 | 270 | < th | dose independent | rect. | 19 | 19 |
| 714 | 73.90 | radiation | 40 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 760 | 74.09 | radiation | 20 | 270 | < th | dose independent | rect. | 19 | 16 |
| 864 | 74.40 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 871 | 74.41 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 872 | 74.41 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 878 | 74.42 | temperature | 20 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 889 | 74.44 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |