BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0140700 Os03g0140700|AK070000
(339 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0140700 Tetratricopeptide-like helical domain containi... 530 e-151
Os04g0510600 Tetratricopeptide-like helical domain containi... 159 3e-39
Os10g0576600 Tetratricopeptide region domain containing pro... 108 4e-24
Os06g0606700 Tetratricopeptide-like helical domain containi... 103 1e-22
Os01g0855200 Tetratricopeptide-like helical domain containi... 88 8e-18
Os05g0447700 Ferritin/ribonucleotide reductase-like family ... 80 2e-15
Os04g0496700 Tetratricopeptide-like helical domain containi... 76 4e-14
Os10g0501900 Helix-turn-helix, Fis-type domain containing p... 72 5e-13
Os07g0542850 72 8e-13
>Os03g0140700 Tetratricopeptide-like helical domain containing protein
Length = 339
Score = 530 bits (1366), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/304 (87%), Positives = 265/304 (87%)
Query: 1 MLVRSASTPVLGALLPSGSHSPAVSSPAVHFFADSSPTVSYHPPTISCRLTPGGSDAHDR 60
MLVRSASTPVLGALLPSGSHSPAVSSPAVHFFADSSPTVSYHPPTISCRLTPGGSDAHDR
Sbjct: 1 MLVRSASTPVLGALLPSGSHSPAVSSPAVHFFADSSPTVSYHPPTISCRLTPGGSDAHDR 60
Query: 61 SLGGLRRACSDGNLAALGASGDDDHHHHLPPSGKCAPRSKPTTLETIQSFTQRGGASTXX 120
SLGGLRRACSDGNLAALGASGDDDHHHHLPPSGKCAPRSKPTTLETIQSFTQRGGAST
Sbjct: 61 SLGGLRRACSDGNLAALGASGDDDHHHHLPPSGKCAPRSKPTTLETIQSFTQRGGASTDE 120
Query: 121 XXXXXXXXXXXXSAEQELSFGKFRFSGSSTFAQVEHPLFLARGLGIDRLXXXXXXXXXXX 180
SAEQELSFGKFRFSGSSTFAQVEHPLFLARGLGIDRL
Sbjct: 121 EEEEDDDDGDHESAEQELSFGKFRFSGSSTFAQVEHPLFLARGLGIDRLGSGLLSADGGS 180
Query: 181 XXXXXXXXXXXXXXYLVTSDNGGNRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDS 240
YLVTSDNGGNRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDS
Sbjct: 181 GGSDGGGGGGAGGSYLVTSDNGGNRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDS 240
Query: 241 RKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHA 300
RKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHA
Sbjct: 241 RKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHA 300
Query: 301 AFLW 304
AFLW
Sbjct: 301 AFLW 304
>Os04g0510600 Tetratricopeptide-like helical domain containing protein
Length = 277
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 104/148 (70%), Gaps = 2/148 (1%)
Query: 157 PLFLARGLGIDRLXXXXXXXXXXXXXXXXXXXXXXXXXYLVTSDNGGNRSDIEMHYKKMI 216
PLFLARGLGIDR+ V ++ + ++ YK+M+
Sbjct: 98 PLFLARGLGIDRIASGLFTAGGGGDGDGGNGGAGRMSA--VEEEHAEKVAALDAQYKRMM 155
Query: 217 EEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDED 276
+E P + LFLRNYAQFL+++KGD+R+AEEYYSRA+LADP+DGE++S+YAKLVW+VHRD D
Sbjct: 156 DEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEVHRDLD 215
Query: 277 RASSYFERAARASPQNSHVLAAHAAFLW 304
R+ +YF ++ +A+P NS+VLAA+A+FLW
Sbjct: 216 RSLTYFHKSVQAAPHNSNVLAAYASFLW 243
>Os10g0576600 Tetratricopeptide region domain containing protein
Length = 227
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 75/98 (76%)
Query: 207 DIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAK 266
D+ +Y++++ +P N L LRNY ++L +++GD AEE Y+RA+LA P+DG+LLS Y +
Sbjct: 107 DMGEYYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQ 166
Query: 267 LVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
L+W+ +D+DRA++Y ERA +A+P + +VL ++A+FLW
Sbjct: 167 LLWETSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
>Os06g0606700 Tetratricopeptide-like helical domain containing protein
Length = 236
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 205 RSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEY 264
R D + HY++MI+ DP N L L NYA+FL +++GD+ +A+EY RAI+A+P DG+ L+ Y
Sbjct: 148 RRDADAHYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALY 207
Query: 265 AKLVWDVHRDEDRASSYFERAARASPQN 292
A LVW+ RD DRA +YF RA A+P +
Sbjct: 208 AGLVWETTRDADRADAYFTRAVHAAPDD 235
>Os01g0855200 Tetratricopeptide-like helical domain containing protein
Length = 512
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
E Y++ + E+P N L L N+AQFLY ++ D +AE Y+ RA+ A+P D E + YA +
Sbjct: 405 EERYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFL 464
Query: 269 WDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
W D A ++ A A P NSH AA+A FLW
Sbjct: 465 WKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLW 500
>Os05g0447700 Ferritin/ribonucleotide reductase-like family protein
Length = 484
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
E Y+ + E+P N L L N+AQFLY ++ D +AE+Y+ RA+ A+P D E LS YA +
Sbjct: 377 EQRYELAVSEEPNNPLILANFAQFLYLVQNDHDRAEQYFERAVRAEPADAEALSRYATFL 436
Query: 269 WDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
W D A ++ A A P N+H AA+A FLW
Sbjct: 437 WKARNDLAAAEDTYQEAIAADPGNAHHAAAYAHFLW 472
>Os04g0496700 Tetratricopeptide-like helical domain containing protein
Length = 113
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 197 VTSDNGGNRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPN 256
V + G R D +Y++MI+ DP N L L NYA+FL +++GD+ +A+EY+ RAI+A+P
Sbjct: 28 VCNGGGDGRRDANAYYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYWERAIVANPG 87
Query: 257 DGELLSEYAKL 267
DG+ L+ YA L
Sbjct: 88 DGDALALYAGL 98
>Os10g0501900 Helix-turn-helix, Fis-type domain containing protein
Length = 363
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 221 CNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASS 280
N L L NYAQ LYQ D +AE+Y+ +A+ A+P DGE + YA +W D A
Sbjct: 263 VNSLILSNYAQLLYQFDKDLDRAEDYFKQAVAAEPVDGEAMRRYALFMWHARGDLAGAED 322
Query: 281 YFERAARASPQNSHVLAAHAAFLW 304
F RA PQ+S +++A FLW
Sbjct: 323 MFTRAIDEEPQSSQHRSSYAWFLW 346
>Os07g0542850
Length = 371
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 219 DPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRA 278
+P N L L NYA+FL +++ D+ +A+EY AI+A+P DG+ L+ YA LVW+ RD DR
Sbjct: 285 NPTNPLLLGNYARFLKKVERDAARAQEYCEHAIVANPGDGDALALYAGLVWETTRDTDRT 344
Query: 279 SSYFER 284
+YF R
Sbjct: 345 DAYFTR 350
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,553,074
Number of extensions: 450735
Number of successful extensions: 1689
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1680
Number of HSP's successfully gapped: 9
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)