Os10g0576600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide region domain containing protein.
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Os10g0576600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 642.74 | 1.19 | 9.65 | 0.35 | 2.26 | 3.58 | 2.9 | 3.31 | -0.585 | 12.3 | 29.78 | 708 | 17 | 3 |
| 648.98 | 1.19 | 9.58 | 0.739 | 3.09 | 4.31 | -0.475 | -- | -0.447 | 12 | 29.96 | 692 | 17.1 | 2.86 |
| 642.75 | 1.18 | 9.61 | 0.68 | 2.71 | 3.98 | -- | 1.22 | -0.442 | 11.9 | 29.61 | 686 | 17.1 | 2.91 |
| 646.01 | 1.18 | 9.61 | 0.69 | 2.74 | 3.98 | -- | -- | -0.475 | 11.9 | 29.6 | 685 | 17.1 | 2.9 |
| 679.72 | 1.21 | 9.75 | 1.14 | -- | 3.28 | -- | 1.57 | -0.623 | -- | 29 | 2121 | 17.2 | 3.2 |
| 865.56 | 1.38 | 9.64 | 0.23 | 1.5 | -- | -0.0811 | -- | -0.356 | 0.882 | -- | -- | -- | -- |
| 865.58 | 1.38 | 9.64 | 0.233 | 1.5 | -- | -- | -- | -0.355 | 0.869 | -- | -- | -- | -- |
| 661.19 | 1.2 | 9.74 | 0.696 | -- | 3.2 | -- | -- | -0.665 | -- | 29.2 | 2125 | 17.3 | 2.73 |
| 654.53 | 1.19 | 9.61 | -- | 2.7 | 3.87 | -- | -- | -0.514 | 11.9 | 29.7 | 684 | 17.2 | 2.82 |
| 1006.62 | 1.48 | 9.61 | 0.289 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 867.02 | 1.38 | 9.64 | -- | 1.51 | -- | -- | -- | -0.381 | 0.876 | -- | -- | -- | -- |
| 672.6 | 1.21 | 9.76 | -- | -- | 3.14 | -- | -- | -0.745 | -- | 29.3 | 2115 | 17.3 | 2.72 |
| 1008.82 | 1.48 | 9.62 | -- | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 646.33 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 2 | 656.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 4 | 660.18 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 5 | 662.13 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 9 | 666.78 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 10 | 668.73 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 11 | 668.83 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 13 |
| 28 | 671.76 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 42 | 671.78 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 43 | 671.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 48 | 671.98 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 89 | 673.34 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 159 | 675.75 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 175 | 675.92 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 230 | 677.72 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 264 | 678.12 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 271 | 678.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 273 | 678.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 274 | 678.31 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 276 | 678.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 278 | 678.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 315 | 679.00 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 340 | 679.16 | temperature | 30.0 | 14400 | > th | dose dependent | no | NA | NA |
| 474 | 679.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 14 |
| 475 | 679.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 20 |
| 479 | 679.83 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 482 | 679.83 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 17 |
| 492 | 679.86 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 507 | 679.91 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 541 | 680.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 552 | 680.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 22 |
| 554 | 680.17 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 557 | 680.18 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 574 | 680.20 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 590 | 680.20 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 603 | 680.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 604 | 680.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 657 | 680.35 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 871 | 681.04 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 872 | 681.07 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 873 | 681.07 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 919 | 681.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 15 |
| 937 | 681.61 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 943 | 681.72 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 996 | 681.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 11 |