BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0576600 Os10g0576600|AK061555
(227 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275 123 9e-29
AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291 103 5e-23
AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306 101 4e-22
AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311 97 7e-21
AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239 96 1e-20
AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537 69 3e-12
AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516 60 8e-10
AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553 59 2e-09
>AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275
Length = 274
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 72/95 (75%)
Query: 110 EYYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLW 169
+YYR +LR P N L+L NYG++L EVE D GAEE Y RA+L +P DG+ LS+YG+L+W
Sbjct: 152 DYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIW 211
Query: 170 ETSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
ET +D+ RA Y ++AV A+P+DC VLGSYA F+W
Sbjct: 212 ETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246
>AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291
Length = 290
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 64/94 (68%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWE 170
+YR+++ P N + L NY ++L+EV D AEE RA+L SP+DG++L++Y +L+W+
Sbjct: 159 HYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK 218
Query: 171 TSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+D RA Y +AV AAP+DCYV SYA FLW
Sbjct: 219 IHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252
>AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306
Length = 305
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWE 170
YYR ++ P N L+ NY ++L+EV+GD+ AEE RA+L + +DG++LSLY L+
Sbjct: 168 YYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILH 227
Query: 171 TSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
QD+ RA +Y ++AV+ +P+DCYV SYA FLW
Sbjct: 228 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261
>AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311
Length = 310
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 110 EYYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLW 169
+YY+ +L P +PL+L+NY ++L E +GDL GAEE Y + + P DG L+ YG+L+
Sbjct: 123 DYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVM 181
Query: 170 ETSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+ QD+ +A +Y ERAVQA+PDD VL +YASFLW
Sbjct: 182 KLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 55/150 (36%)
Query: 110 EYYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLW 169
EYY + VEP + + L NYGR + ++ D A + RA+ ASPDD +L+ Y LW
Sbjct: 157 EYYHKCTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216
Query: 170 E-----------------TSQDKD------------------------------------ 176
E + Q KD
Sbjct: 217 EINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKSSLSKTEDGETLCRYAKAFWSINND 276
Query: 177 --RAAAYLERAVQAAPDDCYVLGSYASFLW 204
+A Y E+AV+A+P+D +LG YA FLW
Sbjct: 277 HEKALFYFEKAVEASPNDSIILGEYARFLW 306
>AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239
Length = 238
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLA-SPDDGDLLSLYGQLLW 169
YY +++ P + L+L NY R+L+EV+GD AEE RA+L+ S DG+LLS+YG L+W
Sbjct: 113 YYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIW 172
Query: 170 ETSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+ D RA +Y ++AVQ++PDDC VL SYA FLW
Sbjct: 173 KNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207
>AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537
Length = 536
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%)
Query: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Y+ L EP NPL+L NY ++L V D AEE + RA+ P D + S Y LW
Sbjct: 424 YQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFLWRA 483
Query: 172 SQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
D A A+ A P + Y +YA+FLW
Sbjct: 484 RDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 135 EVEGDLG--GAEECYARALLASPDDGDLLSLYGQLLWETSQDKDRAAAYLERAVQAAPDD 192
E E D G E Y L P++ LL+ Y Q L+ S D DRA Y +RAV P D
Sbjct: 410 EAEEDTGYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKD 469
Query: 193 CYVLGSYASFLW 204
YA+FLW
Sbjct: 470 AEAFSKYATFLW 481
>AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516
Length = 515
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Y+ L EP+N L+L NY ++L V D AE C+ +A+ + D + S Y LW+
Sbjct: 404 YKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIFLWKV 463
Query: 172 SQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
D A A+ A P + + +YA+FLW
Sbjct: 464 RNDLWAAEENFLEAISADPTNSFYAANYANFLW 496
>AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553
Length = 552
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Y+ L EP N L+L NY ++L + D AE+ + RA A P D + L+ Y LW
Sbjct: 439 YQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFLWRA 498
Query: 172 SQDKDRA-AAYLERAVQAAPDDCYVLGSYASFLW 204
D RA YLE A+ A P + +YA FLW
Sbjct: 499 RNDIWRAEETYLE-AISADPTNSVYSANYAHFLW 531
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,082,591
Number of extensions: 100034
Number of successful extensions: 200
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 11
Length of query: 227
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 132
Effective length of database: 8,502,049
Effective search space: 1122270468
Effective search space used: 1122270468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)