BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0576600 Os10g0576600|AK061555
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0576600 Tetratricopeptide region domain containing pro... 256 1e-68
Os04g0510600 Tetratricopeptide-like helical domain containi... 106 1e-23
Os03g0140700 Tetratricopeptide-like helical domain containi... 106 2e-23
Os06g0606700 Tetratricopeptide-like helical domain containi... 101 4e-22
Os07g0542850 72 3e-13
Os04g0496700 Tetratricopeptide-like helical domain containi... 69 4e-12
Os01g0855200 Tetratricopeptide-like helical domain containi... 67 1e-11
>Os10g0576600 Tetratricopeptide region domain containing protein
Length = 227
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/227 (62%), Positives = 142/227 (62%)
Query: 1 MEATGXXXXXXXXXXXXXXXXXXXXCVSPRSMXXXXXXXXXSLRRATSDADIARXXXXXX 60
MEATG CVSPRSM SLRRATSDADIAR
Sbjct: 1 MEATGTRLTRSASLSPRLRRSPTALCVSPRSMHHHHQQQQQSLRRATSDADIARSAPATA 60
Query: 61 XXXXXXXXRDILXXXXXXXXXGAGRGKGNXXXXXXXXXXXXXXXXXXXXEYYRRVLRVEP 120
RDIL GAGRGKGN EYYRRVLRVEP
Sbjct: 61 SSPLPLLLRDILEEDVVVVVDGAGRGKGNDDDDKTSGRGGGGGGHMDMGEYYRRVLRVEP 120
Query: 121 ENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWETSQDKDRAAA 180
ENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWETSQDKDRAAA
Sbjct: 121 ENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWETSQDKDRAAA 180
Query: 181 YLERAVQAAPDDCYVLGSYASFLWXXXXXXXXXXXXXMKPPLVPASC 227
YLERAVQAAPDDCYVLGSYASFLW MKPPLVPASC
Sbjct: 181 YLERAVQAAPDDCYVLGSYASFLWDAEEDEDDEAEDEMKPPLVPASC 227
>Os04g0510600 Tetratricopeptide-like helical domain containing protein
Length = 277
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 67/93 (72%)
Query: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Y+R++ +P + L LRNY ++L EV+GD AEE Y+RA+LA P DG+++S Y +L+WE
Sbjct: 151 YKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWEV 210
Query: 172 SQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+D DR+ Y ++VQAAP + VL +YASFLW
Sbjct: 211 HRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
>Os03g0140700 Tetratricopeptide-like helical domain containing protein
Length = 339
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 73/94 (77%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWE 170
+Y++++ +P N L LRNY ++L +++GD AEE Y+RA+LA P+DG+LLS Y +L+W+
Sbjct: 211 HYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWD 270
Query: 171 TSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+D+DRA++Y ERA +A+P + +VL ++A+FLW
Sbjct: 271 VHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
>Os06g0606700 Tetratricopeptide-like helical domain containing protein
Length = 236
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 63/82 (76%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWE 170
+YRR+++ +P NPL+L NY R+L+EVEGD A+E RA++A+P DGD L+LY L+WE
Sbjct: 154 HYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYCERAIVANPGDGDALALYAGLVWE 213
Query: 171 TSQDKDRAAAYLERAVQAAPDD 192
T++D DRA AY RAV AAPDD
Sbjct: 214 TTRDADRADAYFTRAVHAAPDD 235
>Os07g0542850
Length = 371
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 117 RVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWETSQDKD 176
+ P NPL+L NY R+L++VE D A+E A++A+P DGD L+LY L+WET++D D
Sbjct: 283 KANPTNPLLLGNYARFLKKVERDAARAQEYCEHAIVANPGDGDALALYAGLVWETTRDTD 342
Query: 177 RAAAYLER 184
R AY R
Sbjct: 343 RTDAYFTR 350
>Os04g0496700 Tetratricopeptide-like helical domain containing protein
Length = 113
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 44/57 (77%)
Query: 111 YYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQL 167
YYRR+++ +P NPL+L NY R+L+EVEGD A+E + RA++A+P DGD L+LY L
Sbjct: 42 YYRRMIQADPANPLLLGNYARFLKEVEGDAARAQEYWERAIVANPGDGDALALYAGL 98
>Os01g0855200 Tetratricopeptide-like helical domain containing protein
Length = 512
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 110 EYYRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLW 169
E Y R + EP+N L+L N+ ++L V+ D AE + RA+ A P D + + Y LW
Sbjct: 406 ERYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLW 465
Query: 170 ETSQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
+ D A + A+ A P + + +YA FLW
Sbjct: 466 KARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLW 500
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,351,601
Number of extensions: 186675
Number of successful extensions: 331
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 8
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)