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Os01g0855200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.043) R2 : 0.885
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.81 (0.0984) R2dE : 0.878 R2E : 0.879
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.403 (0.0906) R2dN8 : 0.00642 R2N8 : 0.00726
σ : 0.808
deviance : 301.2
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 25.74
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.11
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
275.81 0.78 11.8 -0.53 2.6 -3.54 -3.12 -1.92 -0.475 13.4 17.34 8 1.79 --
277.74 0.776 11.8 -0.527 2.63 -3.52 -1.41 -- -0.484 13.5 16.44 7 1.8 --
280.4 0.78 11.8 -0.578 2.35 -3.67 -- 1.06 -0.512 14 16.43 7 2.41 --
285.44 0.787 11.8 -0.566 2.71 -3.4 -- -- -0.494 13.7 15.87 7 1.99 --
285.9 0.788 11.8 -0.63 -- -5.79 -- 1.42 -0.421 -- 27.49 9 3.2 --
359.91 0.889 11.8 -0.546 6.1 -- -1.07 -- -0.436 14.1 -- -- -- --
364.22 0.894 11.8 -0.577 6.1 -- -- -- -0.442 14.1 -- -- -- --
291.75 0.796 11.8 -0.598 -- -5.81 -- -- -0.468 -- 25.9 9 3.11 --
294.01 0.799 11.8 -- 2.89 -3.27 -- -- -0.43 13.7 15.18 7 1.83 --
2588.66 2.38 11.9 -0.833 -- -- -- -- -0.588 -- -- -- -- --
373.01 0.903 11.8 -- 6.11 -- -- -- -0.378 14.1 -- -- -- --
301.2 0.808 11.8 -- -- -5.81 -- -- -0.403 -- 25.74 9 3.11 --
2606.95 2.38 11.8 -- -- -- -- -- -0.495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.94 wind 5.0 270 < th dose independent rect. 24 4
3 271.51 temperature 15.0 270 > th dose independent rect. 23 5
5 272.66 precipitation 0.1 270 < th dose independent rect. 24 4
6 272.66 precipitation 0.1 270 < th dose dependent rect. 24 4
10 273.21 atmosphere 1010.0 270 < th dose independent rect. 24 4
12 273.22 temperature 30.0 270 < th dose independent rect. 24 4
13 273.22 humidity 50.0 270 > th dose independent rect. 24 4
16 273.22 atmosphere 995.0 270 > th dose independent rect. 24 4
17 273.22 radiation 1.0 270 < th dose independent rect. 24 4
22 273.22 temperature 10.0 270 > th dose independent rect. 4 20
23 273.22 radiation 1.0 270 < th dose dependent rect. 24 4
29 273.58 wind 1.0 270 > th dose independent rect. 24 4
32 273.68 temperature 10.0 270 > th dose dependent rect. 24 4
33 273.84 temperature 10.0 270 > th dose independent rect. 13 11
34 273.84 temperature 10.0 270 > th dose independent rect. 24 13
35 273.84 atmosphere 995.0 270 > th dose independent rect. 24 13
36 273.86 atmosphere 1015.0 270 < th dose independent rect. 24 13
56 274.95 wind 9.0 270 < th dose independent rect. 24 13
57 275.11 wind 5.0 270 < th dose independent rect. 1 2
58 275.26 precipitation 0.1 270 < th dose independent rect. 24 13
59 275.26 precipitation 0.1 270 < th dose dependent rect. 24 13
60 275.40 wind 9.0 270 < th dose independent rect. 4 20
61 275.44 wind 9.0 270 < th dose dependent rect. 24 4
64 276.19 precipitation 0.1 270 < th dose independent rect. 4 20
65 276.19 precipitation 0.1 270 < th dose dependent rect. 4 20
71 276.64 radiation 20.0 10 < th dose dependent sin 8 NA
73 276.95 precipitation 0.1 270 < th dose independent rect. 1 2
74 276.95 precipitation 0.1 270 < th dose dependent rect. 1 2
76 277.07 temperature 10.0 270 > th dose independent rect. 1 2
78 277.07 temperature 30.0 270 < th dose independent rect. 1 2
79 277.07 humidity 50.0 270 > th dose independent rect. 1 2
82 277.07 atmosphere 995.0 270 > th dose independent rect. 1 2
83 277.07 atmosphere 1010.0 270 < th dose independent rect. 1 2
85 277.07 radiation 1.0 270 < th dose independent rect. 1 2
90 277.07 temperature 10.0 270 > th dose independent rect. 3 22
91 277.07 radiation 1.0 270 < th dose dependent rect. 1 2
97 277.61 humidity 50.0 270 > th dose independent rect. 24 13
99 277.67 wind 9.0 90 < th dose dependent rect. 2 3
100 277.67 radiation 10.0 10 < th dose dependent rect. 3 4
101 277.79 wind 1.0 270 > th dose independent rect. 1 2
106 278.18 wind 9.0 270 < th dose dependent rect. 5 3
112 278.53 atmosphere 1015.0 90 < th dose dependent rect. 3 2
142 278.92 precipitation 0.1 270 < th dose independent rect. 5 3
143 278.92 precipitation 0.1 270 < th dose dependent rect. 5 3
159 278.96 wind 9.0 270 < th dose independent rect. 8 21
167 279.06 wind 7.0 270 < th dose independent rect. 5 3
168 279.07 radiation 1.0 90 < th dose dependent sin 3 NA
170 279.13 temperature 10.0 270 > th dose independent rect. 5 3
172 279.13 temperature 30.0 270 < th dose independent rect. 5 3
173 279.13 humidity 50.0 270 > th dose independent rect. 5 3
175 279.13 atmosphere 995.0 270 > th dose independent rect. 5 3
176 279.13 atmosphere 1015.0 270 < th dose independent rect. 5 3
177 279.13 temperature 10.0 270 > th dose independent rect. 8 21
178 279.17 radiation 10.0 90 < th dose dependent sin 8 NA
179 279.17 atmosphere 1015.0 270 < th dose dependent rect. 1 2
180 279.27 temperature 15.0 270 > th dose independent rect. 4 6
181 279.28 wind 9.0 270 < th dose independent rect. 13 11
188 279.61 humidity 50.0 270 > th dose dependent rect. 24 4
190 279.70 humidity 50.0 90 > th dose dependent rect. 2 3
191 279.73 radiation 40.0 270 < th dose independent rect. 5 3
199 279.99 radiation 1.0 90 < th dose dependent rect. 2 17
200 280.01 wind 9.0 270 < th dose independent rect. 9 19
202 280.10 temperature 30.0 270 < th dose independent rect. 4 5
207 280.22 precipitation 0.1 270 < th dose independent rect. 4 5
208 280.22 precipitation 0.1 270 < th dose dependent rect. 4 5
217 280.37 humidity 50.0 270 > th dose independent rect. 4 5
218 280.37 atmosphere 995.0 270 > th dose independent rect. 4 5
219 280.37 atmosphere 1015.0 270 < th dose independent rect. 4 5
220 280.37 temperature 10.0 270 > th dose independent rect. 9 19
230 280.60 precipitation 0.1 270 < th dose independent rect. 8 21
231 280.60 precipitation 0.1 270 < th dose dependent rect. 8 21
269 280.88 wind 9.0 270 < th dose independent rect. 3 22
271 280.91 atmosphere 1015.0 270 < th dose dependent rect. 24 4
272 280.91 radiation 10.0 90 < th dose dependent rect. 1 6
289 281.20 temperature 30.0 270 < th dose independent rect. 19 14
307 281.48 precipitation 0.1 270 < th dose independent rect. 9 19
308 281.48 precipitation 0.1 270 < th dose dependent rect. 9 19
322 281.66 humidity 60.0 270 > th dose independent rect. 19 13
345 281.82 temperature 10.0 270 > th dose independent rect. 8 11
346 281.82 atmosphere 1015.0 270 < th dose independent rect. 8 11
347 281.82 temperature 10.0 270 > th dose independent rect. 19 13
350 281.82 atmosphere 995.0 270 > th dose independent rect. 19 13
351 281.83 radiation 40.0 270 < th dose dependent rect. 15 13
361 281.91 atmosphere 995.0 270 > th dose independent rect. 4 20
364 281.96 wind 9.0 270 < th dose independent rect. 9 10
371 282.27 precipitation 0.1 270 < th dose independent rect. 13 11
372 282.27 precipitation 0.1 270 < th dose dependent rect. 13 11
374 282.34 wind 9.0 270 < th dose dependent rect. 4 6
382 282.41 radiation 1.0 90 < th dose dependent rect. 2 15
390 282.54 atmosphere 1015.0 270 < th dose independent rect. 4 19
395 282.79 radiation 10.0 10 < th dose dependent sin 5 NA
399 282.89 wind 9.0 270 < th dose independent rect. 19 14
405 282.96 radiation 40.0 270 < th dose independent rect. 19 13
442 283.71 humidity 50.0 270 > th dose dependent rect. 5 3
470 283.86 precipitation 0.1 270 < th dose independent rect. 9 10
471 283.86 precipitation 0.1 270 < th dose dependent rect. 9 10
494 284.44 radiation 30.0 270 < th dose independent rect. 15 13
499 284.50 radiation 1.0 90 < th dose independent rect. 2 13
518 285.08 radiation 1.0 270 < th dose dependent rect. 22 22
526 285.15 temperature 15.0 10 > th dose independent rect. 10 21
541 285.43 wind 1.0 270 > th dose independent rect. 9 19
549 285.59 wind 7.0 10 < th dose dependent rect. 3 3
552 285.63 wind 1.0 270 > th dose independent rect. 9 10
582 285.88 precipitation 0.1 270 < th dose independent rect. 19 14
583 285.88 precipitation 0.1 270 < th dose dependent rect. 19 14
584 285.89 radiation 1.0 90 < th dose independent rect. 2 17
589 285.92 radiation 40.0 270 < th dose dependent rect. 5 3
635 286.56 radiation 1.0 90 < th dose independent sin 4 NA
640 286.63 radiation 10.0 10 < th dose independent rect. 3 3
660 286.95 humidity 50.0 270 > th dose independent rect. 9 10
679 287.25 atmosphere 995.0 270 > th dose independent rect. 9 19
680 287.27 radiation 1.0 270 < th dose dependent rect. 23 18
721 287.71 temperature 15.0 270 > th dose independent rect. 4 11
726 287.75 wind 9.0 720 < th dose independent rect. 16 13
743 287.93 radiation 1.0 270 < th dose dependent rect. 23 15
747 288.01 wind 5.0 10 < th dose independent rect. 3 3
756 288.17 radiation 40.0 270 < th dose independent rect. 13 11
758 288.19 radiation 10.0 10 < th dose independent sin 9 NA
797 288.47 atmosphere 1015.0 1440 < th dose independent rect. 2 6
803 288.52 humidity 50.0 270 > th dose independent rect. 9 20
813 288.57 temperature 10.0 10 > th dose independent rect. 3 3
815 288.57 temperature 30.0 10 < th dose independent rect. 3 3
816 288.57 humidity 50.0 10 > th dose independent rect. 3 3
819 288.57 atmosphere 995.0 10 > th dose independent rect. 3 3
820 288.57 atmosphere 1010.0 10 < th dose independent rect. 3 3
825 288.57 wind 9.0 10 < th dose independent rect. 6 21
826 288.57 temperature 10.0 10 > th dose independent rect. 6 21
829 288.60 temperature 10.0 10 > th dose dependent rect. 3 3
830 288.63 radiation 1.0 270 > th dose independent rect. 4 4
853 288.78 humidity 50.0 270 > th dose independent rect. 10 18
867 288.99 temperature 10.0 270 > th dose dependent rect. 5 3
879 289.24 precipitation 0.1 10 < th dose independent rect. 6 21
880 289.24 precipitation 0.1 10 < th dose dependent rect. 6 21
884 289.32 temperature 15.0 720 > th dose independent rect. 17 3
890 289.42 wind 9.0 720 < th dose independent rect. 17 11
893 289.46 precipitation 0.1 10 < th dose independent rect. 3 3
894 289.46 precipitation 0.1 10 < th dose dependent rect. 3 3
898 289.51 wind 9.0 90 < th dose dependent rect. 5 21
931 290.06 atmosphere 995.0 720 > th dose independent rect. 5 11