BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0855200 Os01g0855200|AK066597
(512 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0855200 Tetratricopeptide-like helical domain containi... 842 0.0
Os05g0447700 Ferritin/ribonucleotide reductase-like family ... 496 e-140
Os08g0382600 134 2e-31
Os10g0501900 Helix-turn-helix, Fis-type domain containing p... 123 3e-28
Os03g0140700 Tetratricopeptide-like helical domain containi... 90 5e-18
Os04g0510600 Tetratricopeptide-like helical domain containi... 89 1e-17
Os10g0576600 Tetratricopeptide region domain containing pro... 66 7e-11
>Os01g0855200 Tetratricopeptide-like helical domain containing protein
Length = 512
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/478 (88%), Positives = 421/478 (88%)
Query: 35 RRHGVLGGVRLSRGQSSLASWSVGMTRRRAGGHQMARRALSAXXXXXXXXXXXXEEFLRR 94
RRHGVLGGVRLSRGQSSLASWSVGMTRRRAGGHQMARRALSA EEFLRR
Sbjct: 35 RRHGVLGGVRLSRGQSSLASWSVGMTRRRAGGHQMARRALSASIDSIGSDGGDDEEFLRR 94
Query: 95 IQELAVGLHPGAAGCGWPASVERSASSVGLPLSLRMLKRKKXXXXXXGRWDERLIDCAGE 154
IQELAVGLHPGAAGCGWPASVERSASSVGLPLSLRMLKRKK GRWDERLIDCAGE
Sbjct: 95 IQELAVGLHPGAAGCGWPASVERSASSVGLPLSLRMLKRKKQQQQQQGRWDERLIDCAGE 154
Query: 155 SARGAVGRAFSSMVLIIRELQSFTLQMRQALFYEDLQRVLARVHAEMHASFVWLFQHIFS 214
SARGAVGRAFSSMVLIIRELQSFTLQMRQALFYEDLQRVLARVHAEMHASFVWLFQHIFS
Sbjct: 155 SARGAVGRAFSSMVLIIRELQSFTLQMRQALFYEDLQRVLARVHAEMHASFVWLFQHIFS 214
Query: 215 GTPALMVSVMLLLANFTVYSMGDSXXXXXXXXXXXXXXXXXXMVDTQHAEQSHSHQRFDH 274
GTPALMVSVMLLLANFTVYSMGDS MVDTQHAEQSHSHQRFDH
Sbjct: 215 GTPALMVSVMLLLANFTVYSMGDSVAAAATLPPPQPPAATVAMVDTQHAEQSHSHQRFDH 274
Query: 275 ASLKTLSIGRTASVXXXXXXXXKVRPVAGATGDGRSDEWSNRQSGAVLPQDASQGTPGAG 334
ASLKTLSIGRTASV KVRPVAGATGDGRSDEWSNRQSGAVLPQDASQGTPGAG
Sbjct: 275 ASLKTLSIGRTASVGGNSGGGGKVRPVAGATGDGRSDEWSNRQSGAVLPQDASQGTPGAG 334
Query: 335 AEEAVPVSEAMAVEETEDELVIWKRIADEATRMQASVRAEALMDPDTLGQLVAPVEAKLX 394
AEEAVPVSEAMAVEETEDELVIWKRIADEATRMQASVRAEALMDPDTLGQLVAPVEAKL
Sbjct: 335 AEEAVPVSEAMAVEETEDELVIWKRIADEATRMQASVRAEALMDPDTLGQLVAPVEAKLD 394
Query: 395 XXXXXXXXXXXXRYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADA 454
RYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADA
Sbjct: 395 TEDTAEFAATEERYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADA 454
Query: 455 EAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDDTCYPLD 512
EAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDDTCYPLD
Sbjct: 455 EAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDDTCYPLD 512
>Os05g0447700 Ferritin/ribonucleotide reductase-like family protein
Length = 484
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/479 (60%), Positives = 327/479 (68%), Gaps = 32/479 (6%)
Query: 40 LGGVRLSRGQSSLASWSVGMTRRRAGGHQMARRALSAXXXXXXXXXXXXEEFLRRIQELA 99
LGG L+R ++ + +W G+ RR G Q AR ALSA EFLRRI+ELA
Sbjct: 32 LGGAGLARSRAPV-NWGAGVMARRRGLRQPARCALSASLDGVGGGDA---EFLRRIEELA 87
Query: 100 --VGLHPGAAGCGWPASVERSASSVGLPLSLRMLKRKKXXXXXXGR---WDERLIDCAGE 154
VG+ P GCGWPASVERSASS G+PLSLRMLKRKK R WDERL+ AG+
Sbjct: 88 AAVGVQP--TGCGWPASVERSASSAGMPLSLRMLKRKKQQQQLVARQTRWDERLLGSAGD 145
Query: 155 SARGAVGRAFSSMVLIIRELQSFTLQ-MRQALFYEDLQRVLARVHAEMHASFVWLFQHIF 213
S VGRAFSSMVLI+RELQSF LQ MR+A+ +DLQ VLARVH EMHASFVWLFQHIF
Sbjct: 146 S----VGRAFSSMVLIVRELQSFALQQMREAMLGDDLQSVLARVHGEMHASFVWLFQHIF 201
Query: 214 SGTPALMVSVMLLLANFTVYSMGDSXXXXXXXXXXXXXXXXXXMVDTQHAEQSHSHQRFD 273
+GTPALMVS+MLLLANFTV+SMG S +VDTQHA+ S RFD
Sbjct: 202 AGTPALMVSLMLLLANFTVHSMGHSVAAAAAIPPAPPTSAAVAVVDTQHADPSLP--RFD 259
Query: 274 HASLKTLSIGRTASVXXXXXXXXKVRPVAGATGDGRSDEWSNRQSGAVLPQDASQGTPGA 333
AS+KT SIGR ASV KVRPVAGATGD R DE R SG Q A GA
Sbjct: 260 AASVKTFSIGRAASVGGSSGGGGKVRPVAGATGDDRWDESLARLSGVAPQQPAPPAGTGA 319
Query: 334 GAEEAVPVSEAMAVEETEDELVIWKRIADEATRMQASVRAEALMDPDTLGQLVAPVEAKL 393
G MAV DE IW+R+ EA+ MQ + RAE L DPD LG LVAPVEA++
Sbjct: 320 G----------MAV----DEQAIWERMVAEASNMQENARAEELSDPDVLGNLVAPVEAEI 365
Query: 394 XXXXXXXXXXXXXRYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPAD 453
RYE AVSEEP+N L+L+NFAQFLY VQ DHDRAE YF+RAVRAEPAD
Sbjct: 366 ETEGHAEYTRTEQRYELAVSEEPNNPLILANFAQFLYLVQNDHDRAEQYFERAVRAEPAD 425
Query: 454 AEAMGRYATFLWKARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDDTCYPLD 512
AEA+ RYATFLWKARNDLAAAE+TYQEAIAA+P N+HHAAAYAHFLWNTGG+DTC+PLD
Sbjct: 426 AEALSRYATFLWKARNDLAAAEDTYQEAIAADPGNAHHAAAYAHFLWNTGGEDTCFPLD 484
>Os08g0382600
Length = 128
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 87/116 (75%), Gaps = 7/116 (6%)
Query: 124 LPLSLRMLKRKKXXXXXX--GRWDERLIDCAGESARGAVGRAFSSMVLIIRELQSFTLQ- 180
+PLSL+MLKRKK RWDERL+D AG+S +GR F SMVLI++ELQSF LQ
Sbjct: 1 MPLSLQMLKRKKQQQLVVWQTRWDERLLDSAGDS----MGRTFLSMVLIVQELQSFALQQ 56
Query: 181 MRQALFYEDLQRVLARVHAEMHASFVWLFQHIFSGTPALMVSVMLLLANFTVYSMG 236
MR+A+ ++ Q VLARVH EMHASFVWLFQ IF+ T ALMVS MLLLANF V+SM
Sbjct: 57 MREAMLGDNQQGVLARVHGEMHASFVWLFQDIFASTLALMVSPMLLLANFIVHSMA 112
>Os10g0501900 Helix-turn-helix, Fis-type domain containing protein
Length = 363
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 408 YERAVSEEPD-NSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLWK 466
YER ++ D NSL+LSN+AQ LY +D DRAE YFK+AV AEP D EAM RYA F+W
Sbjct: 253 YERIIATAADVNSLILSNYAQLLYQFDKDLDRAEDYFKQAVAAEPVDGEAMRRYALFMWH 312
Query: 467 ARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDDTC 508
AR DLA AE+ + AI EP +S H ++YA FLW TGG +TC
Sbjct: 313 ARGDLAGAEDMFTRAIDEEPQSSQHRSSYAWFLWMTGGVETC 354
>Os03g0140700 Tetratricopeptide-like helical domain containing protein
Length = 339
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%)
Query: 408 YERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLWKA 467
Y++ + E+P N L L N+AQFLY ++ D +AE Y+ RA+ A+P D E + YA +W
Sbjct: 212 YKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWDV 271
Query: 468 RNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLWNTGGDD 506
D A ++ A A P NSH AA+A FLW+T D
Sbjct: 272 HRDEDRASSYFERAARASPQNSHVLAAHAAFLWDTDDGD 310
>Os04g0510600 Tetratricopeptide-like helical domain containing protein
Length = 277
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 62/94 (65%)
Query: 407 RYERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLWK 466
+Y+R + E+P ++L L N+AQFL+ V+ D RAE Y+ RA+ A+P+D E M +YA +W+
Sbjct: 150 QYKRMMDEQPGDALFLRNYAQFLHEVKGDARRAEEYYSRAMLADPSDGEIMSQYAKLVWE 209
Query: 467 ARNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLW 500
DL + + +++ A P NS+ AAYA FLW
Sbjct: 210 VHRDLDRSLTYFHKSVQAAPHNSNVLAAYASFLW 243
>Os10g0576600 Tetratricopeptide region domain containing protein
Length = 227
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 408 YERAVSEEPDNSLLLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLWKA 467
Y R + EP+N L+L N+ ++L V+ D AE + RA+ A P D + + Y LW+
Sbjct: 112 YRRVLRVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASPDDGDLLSLYGQLLWET 171
Query: 468 RNDLAAAEETYQEAIAAEPSNSHHAAAYAHFLW 500
D A + A+ A P + + +YA FLW
Sbjct: 172 SQDKDRAAAYLERAVQAAPDDCYVLGSYASFLW 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,112,797
Number of extensions: 505058
Number of successful extensions: 1701
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1675
Number of HSP's successfully gapped: 7
Length of query: 512
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 407
Effective length of database: 11,553,331
Effective search space: 4702205717
Effective search space used: 4702205717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)