BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0140700 Os03g0140700|AK070000
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291 121 4e-28
AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275 114 5e-26
AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306 104 6e-23
AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239 103 2e-22
AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311 102 2e-22
AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537 84 1e-16
AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553 80 2e-15
AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516 76 2e-14
>AT5G20190.1 | chr5:6814093-6815171 FORWARD LENGTH=291
Length = 290
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 74/98 (75%)
Query: 207 DIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAK 266
+ ++HY+KMIE +P NG+FL NYA+FL +++ D KAEEY RAIL PNDG +L+ YA+
Sbjct: 155 NTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAE 214
Query: 267 LVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
LVW +H+D RA +YF +A A+P++ +V A++A FLW
Sbjct: 215 LVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLW 252
>AT4G17940.1 | chr4:9965787-9966778 FORWARD LENGTH=275
Length = 274
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 70/101 (69%)
Query: 204 NRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSE 263
++S I +Y++M+ +P N L L NY +FLY+++ D+ AEEYY RAIL +P DGE LS
Sbjct: 146 DKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSM 205
Query: 264 YAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
Y +L+W+ RDE RA YF++A ASP + VL ++A F+W
Sbjct: 206 YGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMW 246
>AT1G80130.1 | chr1:30141250-30142478 REVERSE LENGTH=306
Length = 305
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 69/96 (71%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
+ +Y++MI+ +P N L NYA+FL ++KGD +KAEEY RAIL + NDG +LS YA L+
Sbjct: 166 DTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLI 225
Query: 269 WDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
H+D RA SY+++A + SP++ +V A++A FLW
Sbjct: 226 LHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261
>AT4G32340.1 | chr4:15612741-15614219 REVERSE LENGTH=239
Length = 238
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 208 IEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADP-NDGELLSEYAK 266
++ +Y++MI+ P + L L NYA+FL ++KGD RKAEEY RA+L++ DGELLS Y
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169
Query: 267 LVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
L+W H D RA SY+++A ++SP + +VLA++A FLW
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 207
>AT1G04530.1 | chr1:1234456-1235895 REVERSE LENGTH=311
Length = 310
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 69/94 (73%), Gaps = 1/94 (1%)
Query: 211 HYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLVWD 270
+YK M+EE P + L L+NYA+FL + KGD AEEYY + + +P+DG L+ Y +LV
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182
Query: 271 VHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
+H+DE +A SYFERA +ASP +S VLAA+A+FLW
Sbjct: 183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLW 216
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Query: 211 HYKKMIEEDPCNGLFLRNYAQFLYQIKG--------------DSRKAEEYYSRAI----- 251
++++ ++ P + + L YA FL++I + +E+ + A
Sbjct: 193 YFERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKS 252
Query: 252 -LADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
L+ DGE L YAK W ++ D ++A YFE+A ASP +S +L +A FLW
Sbjct: 253 SLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLW 306
>AT2G29670.1 | chr2:12682309-12684745 REVERSE LENGTH=537
Length = 536
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
E+ Y+ + ++P N L L NYAQFLY + D +AEEY+ RA+ +P D E S+YA +
Sbjct: 421 ELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATFL 480
Query: 269 WDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
W D A F A A P NS+ A +A FLW
Sbjct: 481 WRARDDLWAAEETFLEAIDADPTNSYYAANYANFLW 516
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 242 KAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHAA 301
K E Y + +PN+ LL+ YA+ ++ V D DRA YF+RA P+++ + +A
Sbjct: 419 KTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYAT 478
Query: 302 FLW 304
FLW
Sbjct: 479 FLW 481
>AT1G07280.1 | chr1:2238505-2240991 FORWARD LENGTH=553
Length = 552
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
E+ Y+ + ++P N L L NYAQFLY I D +AE+Y+ RA A+P D E L++YA +
Sbjct: 436 ELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATFL 495
Query: 269 WDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
W D RA + A A P NS A +A FLW
Sbjct: 496 WRARNDIWRAEETYLEAISADPTNSVYSANYAHFLW 531
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 239 DSRKAEEYYSRAILADPNDGELLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAA 298
D K E Y + +P + LL+ YA+ ++ + D DRA YF+RAA+A P ++ L
Sbjct: 431 DYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNK 490
Query: 299 HAAFLW 304
+A FLW
Sbjct: 491 YATFLW 496
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 209 EMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGELLSEYAKLV 268
E ++K+ + +P + L YA FL++ + D +AEE Y AI ADP + + YA +
Sbjct: 471 EKYFKRAAKAEPADAEALNKYATFLWRARNDIWRAEETYLEAISADPTNSVYSANYAHFL 530
Query: 269 WDVHRDE 275
W+ DE
Sbjct: 531 WNTGGDE 537
>AT3G47080.1 | chr3:17338415-17340129 REVERSE LENGTH=516
Length = 515
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 56/105 (53%)
Query: 200 DNGGNRSDIEMHYKKMIEEDPCNGLFLRNYAQFLYQIKGDSRKAEEYYSRAILADPNDGE 259
D+ N + E+ YK + ++P N L L NYAQFLY + D +AE + +AI ++ D E
Sbjct: 392 DDYANYTRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAE 451
Query: 260 LLSEYAKLVWDVHRDEDRASSYFERAARASPQNSHVLAAHAAFLW 304
S+YA +W V D A F A A P NS A +A FLW
Sbjct: 452 TYSKYAIFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLW 496
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,179,876
Number of extensions: 243465
Number of successful extensions: 777
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 16
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)