BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0508300 Os04g0508300|AK065962
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0508300 Glutaredoxin 205 7e-54
Os02g0618100 Similar to Glutaredoxin 135 6e-33
Os08g0565800 Similar to Glutaredoxin 100 2e-22
Os02g0646400 Similar to Glutaredoxin 89 5e-19
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 68 1e-12
Os06g0659500 Similar to Glutaredoxin 66 5e-12
>Os04g0508300 Glutaredoxin
Length = 112
Score = 205 bits (521), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAE 60
MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAE
Sbjct: 1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAE 60
Query: 61 WTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTE 98
WTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTE
Sbjct: 61 WTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTE 98
>Os02g0618100 Similar to Glutaredoxin
Length = 129
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 19 SKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIG 78
SK+YCPFC RVK+L +L A++KA+ELD ESDGSELQSALA+WTGQRTVP VFI GKHIG
Sbjct: 41 SKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIG 100
Query: 79 GCDDTLALNNEGKLVPLLTE 98
GCDDT+A++ G LVPLLTE
Sbjct: 101 GCDDTMAMHKGGNLVPLLTE 120
>Os08g0565800 Similar to Glutaredoxin
Length = 164
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 7 KETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDG-ESDGSELQSALAEWTGQR 65
K T+A PVV+YSKS+C + + VK LF+++G IELD + G +LQ L TGQ
Sbjct: 64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQS 123
Query: 66 TVPNVFINGKHIGGCDDTLALNNEGKLVPLLTE 98
TVPNVFI GKHIGGC DT+ L+ +G+L +L+E
Sbjct: 124 TVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156
>Os02g0646400 Similar to Glutaredoxin
Length = 131
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%)
Query: 4 AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTG 63
A + + S + ++SK+YCP+ +R K++F L +ELD DG E+QS L + G
Sbjct: 32 AFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVG 91
Query: 64 QRTVPNVFINGKHIGGCDDTLALNNEGKLVPLL 96
+ TVP VF+NG+H+GG DDT ++ G+L LL
Sbjct: 92 RHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 15 VVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQR-TVPNVFIN 73
VV++ S C C VK LF +LG ++ E+D + +G +++ ALA G+ VP VFI
Sbjct: 14 VVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIG 73
Query: 74 GKHIGGCDDTLALNNEGKLVPLLTE 98
GK +G D ++L+ GKLVPLL E
Sbjct: 74 GKLVGPTDQVMSLHLAGKLVPLLRE 98
>Os06g0659500 Similar to Glutaredoxin
Length = 77
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 43 IELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLT 97
+ELD DG E+Q AL++ G+RTVP VF++GKH+GG DDT+ GKL LL
Sbjct: 16 VELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLN 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,241,564
Number of extensions: 112913
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 7
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)