Os02g0618100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutaredoxin.
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Os02g0618100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutaredoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.01 | 0.548 | 11.3 | -0.959 | 3.05 | 1.17 | -0.926 | -0.592 | -0.673 | 14.4 | 78.78 | 1274 | -- | -- |
| 135.61 | 0.542 | 11.3 | -0.917 | 3.08 | 1.15 | -0.86 | -- | -0.678 | 14.3 | 78.37 | 1196 | -- | -- |
| 138.12 | 0.547 | 11.3 | -0.987 | 3.09 | 1.22 | -- | -0.415 | -0.667 | 14.3 | 77.27 | 1200 | -- | -- |
| 138.28 | 0.548 | 11.3 | -0.949 | 3.09 | 1.19 | -- | -- | -0.665 | 14.3 | 78 | 1198 | -- | -- |
| 355.11 | 0.882 | 11.3 | -0.832 | -- | 3.42 | -- | -1.29 | -0.815 | -- | 157.5 | 2483 | -- | -- |
| 165.26 | 0.603 | 11.3 | -0.708 | 2.89 | -- | -1.09 | -- | -0.715 | 14.5 | -- | -- | -- | -- |
| 169.5 | 0.61 | 11.3 | -0.737 | 2.88 | -- | -- | -- | -0.721 | 14.4 | -- | -- | -- | -- |
| 357.3 | 0.884 | 11.3 | -0.815 | -- | 3.35 | -- | -- | -0.817 | -- | 136 | 47520 | -- | -- |
| 160.77 | 0.591 | 11.3 | -- | 3.09 | 1.03 | -- | -- | -0.602 | 14.3 | 83.51 | 1198 | -- | -- |
| 659.34 | 1.2 | 11.3 | -0.859 | -- | -- | -- | -- | -0.793 | -- | -- | -- | -- | -- |
| 183.82 | 0.634 | 11.3 | -- | 2.9 | -- | -- | -- | -0.639 | 14.4 | -- | -- | -- | -- |
| 374.81 | 0.905 | 11.3 | -- | -- | 3.36 | -- | -- | -0.727 | -- | 136 | 47520 | -- | -- |
| 678.82 | 1.22 | 11.3 | -- | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.61 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 2 | 123.74 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 24 | 129.21 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 4 |
| 33 | 130.53 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 7 |
| 46 | 131.55 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 47 | 131.55 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 11 |
| 63 | 132.56 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 71 | 133.02 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 75 | 133.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 77 | 133.48 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 88 | 133.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 102 | 134.31 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 105 | 134.38 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 144 | 135.56 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 154 | 135.67 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 20 | 20 |
| 158 | 135.78 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 5 |
| 161 | 135.83 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 8 |
| 173 | 135.99 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 175 | 136.02 | radiation | 1 | 270 | < th | dose independent | sin | 13 | NA |
| 188 | 136.24 | radiation | 10 | 720 | < th | dose dependent | sin | 15 | NA |
| 189 | 136.24 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 191 | 136.29 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 11 |
| 218 | 136.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 224 | 136.72 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 254 | 137.11 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 264 | 137.22 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 276 | 137.31 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 282 | 137.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 304 | 137.59 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 19 |
| 306 | 137.60 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 21 |
| 310 | 137.63 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 312 | 137.64 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 323 | 137.71 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 334 | 137.79 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 6 |
| 338 | 137.82 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 357 | 137.95 | humidity | 70 | 720 | > th | dose dependent | sin | 19 | NA |
| 364 | 137.99 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 375 | 138.08 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 17 |
| 389 | 138.14 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 15 |
| 397 | 138.20 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 405 | 138.27 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 10 | 18 |
| 411 | 138.31 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 412 | 138.32 | radiation | 1 | 270 | > th | dose independent | sin | 13 | NA |
| 419 | 138.36 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 436 | 138.46 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 456 | 138.59 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 470 | 138.66 | temperature | 15 | 270 | > th | dose independent | rect. | 18 | 10 |
| 516 | 138.85 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 16 |
| 526 | 138.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 556 | 139.05 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 15 |
| 578 | 139.16 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 9 |
| 599 | 139.27 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 19 | 9 |
| 602 | 139.28 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 20 |
| 640 | 139.43 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 10 | 6 |
| 648 | 139.46 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 678 | 139.57 | radiation | 1 | 270 | > th | dose independent | rect. | 14 | 18 |
| 680 | 139.58 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 703 | 139.70 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 749 | 139.95 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 16 | 18 |
| 773 | 140.05 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 9 | 15 |
| 779 | 140.08 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 794 | 140.13 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 802 | 140.17 | temperature | 15 | 10 | > th | dose independent | rect. | 21 | 19 |
| 824 | 140.27 | radiation | 1 | 270 | > th | dose independent | rect. | 15 | 3 |
| 827 | 140.27 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 23 |
| 842 | 140.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 938 | 140.69 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 973 | 140.80 | radiation | 1 | 270 | > th | dose independent | rect. | 16 | 1 |