BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0618100 Os02g0618100|J043016G05
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0618100 Similar to Glutaredoxin 199 5e-52
Os04g0508300 Glutaredoxin 145 9e-36
Os02g0646400 Similar to Glutaredoxin 89 9e-19
Os08g0565800 Similar to Glutaredoxin 76 8e-15
Os01g0936000 Similar to AT.I.24-1 protein (Fragment) 69 1e-12
Os06g0659500 Similar to Glutaredoxin 68 2e-12
Os11g0656000 Glutaredoxin-like, plant II family protein 64 4e-11
>Os02g0618100 Similar to Glutaredoxin
Length = 129
Score = 199 bits (506), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/129 (83%), Positives = 108/129 (83%)
Query: 1 VVFVFLAPLRLXXXXXXXXXXXXXXXXXXXXXLLPRRRLQSKTYCPFCARVKRLLAELAA 60
VVFVFLAPLRL LLPRRRLQSKTYCPFCARVKRLLAELAA
Sbjct: 1 VVFVFLAPLRLRAARGAQQAGHGARQGQGDRRLLPRRRLQSKTYCPFCARVKRLLAELAA 60
Query: 61 SYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTE 120
SYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTE
Sbjct: 61 SYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTE 120
Query: 121 AGAIATPSL 129
AGAIATPSL
Sbjct: 121 AGAIATPSL 129
>Os04g0508300 Glutaredoxin
Length = 112
Score = 145 bits (365), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 77/88 (87%)
Query: 41 SKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIG 100
SK+YCPFC RVK+L +L A++KA+ELD ESDGSELQSALA+WTGQRTVP VFI GKHIG
Sbjct: 19 SKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIG 78
Query: 101 GCDDTMAMHKGGNLVPLLTEAGAIATPS 128
GCDDT+A++ G LVPLLTEAGAIA+ +
Sbjct: 79 GCDDTLALNNEGKLVPLLTEAGAIASSA 106
>Os02g0646400 Similar to Glutaredoxin
Length = 131
Score = 89.0 bits (219), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 49/78 (62%)
Query: 41 SKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIG 100
SKTYCP+ R KR+ +L + VELD+ DG E+QS L D G+ TVP VF+ G+H+G
Sbjct: 47 SKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVG 106
Query: 101 GCDDTMAMHKGGNLVPLL 118
G DDT H G L LL
Sbjct: 107 GSDDTANAHSNGQLQKLL 124
>Os08g0565800 Similar to Glutaredoxin
Length = 164
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 39 LQSKTYCPFCARVKRLLAELAASYKAVELD-VESDGSELQSALADWTGQRTVPCVFIKGK 97
+ SK++C + VK L + +ELD + + G +LQ L TGQ TVP VFI GK
Sbjct: 74 IYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGK 133
Query: 98 HIGGCDDTMAMHKGGNLVPLLTE 120
HIGGC DT+ +H+ G L +L+E
Sbjct: 134 HIGGCTDTVKLHRKGELATMLSE 156
>Os01g0936000 Similar to AT.I.24-1 protein (Fragment)
Length = 125
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 43 TYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRT-VPCVFIKGKHIGG 101
+ C C VK L +EL S+ E+D + +G +++ ALA G+ VP VFI GK +G
Sbjct: 20 SNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGP 79
Query: 102 CDDTMAMHKGGNLVPLLTEAGAI 124
D M++H G LVPLL EAGA+
Sbjct: 80 TDQVMSLHLAGKLVPLLREAGAL 102
>Os06g0659500 Similar to Glutaredoxin
Length = 77
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 40/63 (63%)
Query: 57 ELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 116
EL VELD DG E+Q AL+D G+RTVP VF+ GKH+GG DDT+ ++ G L
Sbjct: 8 ELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAK 67
Query: 117 LLT 119
LL
Sbjct: 68 LLN 70
>Os11g0656000 Glutaredoxin-like, plant II family protein
Length = 109
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 41 SKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALA------DWTGQRTVPCVFI 94
+K+ C C V LL ELA S ELD + G E++ LA G VP VFI
Sbjct: 18 TKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFI 77
Query: 95 KGKHIGGCDDTMAMHKGGNLVPLLTEAGAI 124
G +GG MAMH G LVPLL AGA+
Sbjct: 78 GGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,665,624
Number of extensions: 125765
Number of successful extensions: 452
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 9
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)