Os02g0646400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutaredoxin.
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Os02g0646400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutaredoxin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.33 | 0.232 | 10.1 | -0.459 | 0.894 | 0.012 | -0.857 | -0.908 | -0.16 | 13.2 | 20.5 | 1550 | -- | -- |
| 24.92 | 0.233 | 10 | -0.42 | 0.916 | 0.318 | -0.808 | -- | -0.164 | 13.2 | 18.45 | 3457 | -- | -- |
| 26.92 | 0.243 | 10.1 | -0.412 | 0.901 | -0.00311 | -- | -0.618 | -0.134 | 13.1 | 21.07 | 1711 | -- | -- |
| 27.67 | 0.245 | 10.1 | -0.443 | 0.9 | 0.336 | -- | -- | -0.163 | 13.2 | 18.5 | 3288 | -- | -- |
| 72.03 | 0.397 | 10.1 | -0.485 | -- | 0.31 | -- | -0.461 | -0.211 | -- | 21.07 | 1711 | -- | -- |
| 26.24 | 0.24 | 10 | -0.239 | 0.894 | -- | -0.847 | -- | -0.0957 | 13.2 | -- | -- | -- | -- |
| 29.22 | 0.253 | 10 | -0.269 | 0.895 | -- | -- | -- | -0.1 | 13.1 | -- | -- | -- | -- |
| 72.57 | 0.398 | 10.1 | -0.391 | -- | 0.338 | -- | -- | -0.196 | -- | 21.3 | 885 | -- | -- |
| 30.87 | 0.259 | 10 | -- | 0.894 | -0.1 | -- | -- | -0.0494 | 13.1 | 19.2 | 8050 | -- | -- |
| 78.83 | 0.415 | 10.1 | -0.303 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 31.12 | 0.261 | 10 | -- | 0.899 | -- | -- | -- | -0.0705 | 13.1 | -- | -- | -- | -- |
| 75.89 | 0.407 | 10.1 | -- | -- | 0.296 | -- | -- | -0.151 | -- | 21.69 | 3760 | -- | -- |
| 81.25 | 0.421 | 10 | -- | -- | -- | -- | -- | -0.0847 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.78 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 6 | 23.21 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 10 | 23.36 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 13 | 23.42 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 20 | 23.52 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 21 | 23.53 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 23 | 23.54 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 21 |
| 28 | 23.61 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 29 | 23.62 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 39 | 23.70 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 42 | 23.70 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 43 | 23.71 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 46 | 23.71 | temperature | 20.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 50 | 23.72 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 10 | 10 |
| 55 | 23.74 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 57 | 23.74 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 13 | 10 |
| 77 | 23.78 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 97 | 23.81 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 100 | 23.81 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 15 | 2 |
| 109 | 23.81 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 114 | 23.82 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 14 | 5 |
| 143 | 23.85 | wind | 1.0 | 720 | < th | dose independent | rect. | 20 | 4 |
| 144 | 23.85 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 159 | 23.86 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 166 | 23.87 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 19 | NA |
| 180 | 23.88 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 192 | 23.88 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 212 | 23.90 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 225 | 23.90 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 228 | 23.91 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 256 | 23.93 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 295 | 23.95 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 304 | 23.95 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 305 | 23.95 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 306 | 23.96 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 19 | NA |
| 317 | 23.96 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 318 | 23.96 | atmosphere | 995.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 343 | 23.97 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 362 | 23.98 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 405 | 23.98 | wind | 1.0 | 270 | < th | dose dependent | rect. | 13 | 11 |
| 408 | 23.99 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 462 | 24.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 518 | 24.01 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 524 | 24.01 | wind | 3.0 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 569 | 24.01 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 572 | 24.02 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 573 | 24.02 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 597 | 24.02 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 642 | 24.03 | wind | 7.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 667 | 24.03 | atmosphere | 1000.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 678 | 24.03 | wind | 1.0 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 735 | 24.04 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 766 | 24.04 | atmosphere | 1015.0 | 14400 | < th | dose dependent | sin | 18 | NA |
| 997 | 24.05 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 23 | 19 |