BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0504500 Os04g0504500|J065132I19
         (45 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0504500  Pathogenesis-related transcriptional factor an...    97   4e-21
Os04g0653600  Similar to AINTEGUMENTA-like protein                 69   7e-13
Os06g0657500  Similar to ANT (Ovule development protein aint...    69   9e-13
Os03g0313100  Similar to ANT-like protein                          68   1e-12
Os03g0232200  Similar to BABY BOOM                                 65   7e-12

>Os04g0504500 Pathogenesis-related transcriptional factor and ERF domain
          containing protein
          Length = 45

 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  VLHTYNHVVNLSFRHRWTGRYEAHLWDNSCRREGQSRKGRQGMYI 45
          VLHTYNHVVNLSFRHRWTGRYEAHLWDNSCRREGQSRKGRQGMYI
Sbjct: 1  VLHTYNHVVNLSFRHRWTGRYEAHLWDNSCRREGQSRKGRQGMYI 45



>Os04g0653600 Similar to AINTEGUMENTA-like protein
          Length = 495

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/28 (100%), Positives = 28/28 (100%)

Query: 14  RHRWTGRYEAHLWDNSCRREGQSRKGRQ 41
           RHRWTGRYEAHLWDNSCRREGQSRKGRQ
Sbjct: 150 RHRWTGRYEAHLWDNSCRREGQSRKGRQ 177



>Os06g0657500 Similar to ANT (Ovule development protein aintegumenta)
          Length = 469

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/28 (100%), Positives = 28/28 (100%)

Query: 14  RHRWTGRYEAHLWDNSCRREGQSRKGRQ 41
           RHRWTGRYEAHLWDNSCRREGQSRKGRQ
Sbjct: 136 RHRWTGRYEAHLWDNSCRREGQSRKGRQ 163



>Os03g0313100 Similar to ANT-like protein
          Length = 431

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 27/28 (96%)

Query: 14  RHRWTGRYEAHLWDNSCRREGQSRKGRQ 41
           RHRWTGRYEAHLWDN+CRREGQ RKGRQ
Sbjct: 140 RHRWTGRYEAHLWDNTCRREGQKRKGRQ 167



>Os03g0232200 Similar to BABY BOOM
          Length = 642

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 24/28 (85%), Positives = 28/28 (100%)

Query: 14  RHRWTGRYEAHLWDNSCRREGQSRKGRQ 41
           RHRWTGRYEAHLWDNSC+++GQ+RKGRQ
Sbjct: 297 RHRWTGRYEAHLWDNSCKKDGQTRKGRQ 324



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,726,641
Number of extensions: 44635
Number of successful extensions: 120
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 5
Length of query: 45
Length of database: 17,035,801
Length adjustment: 19
Effective length of query: 26
Effective length of database: 16,043,735
Effective search space: 417137110
Effective search space used: 417137110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)