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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0504500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0273) R2 : 0.00154
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0482 (0.0575) R2dN8 : 0.00198 R2N8 : 0.00154
σ : 0.514
deviance : 121.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
116.44 0.507 3.29 0.125 0.187 -0.446 -0.38 1.92 0.0323 5.16 50 4301 -- --
118.88 0.508 3.33 0.0934 0.213 -0.147 -0.309 -- 0.018 5.1 57 1041 -- --
116.7 0.503 3.28 0.121 0.191 -0.428 -- 1.87 0.0354 5.99 49.98 4310 -- --
118.98 0.508 3.34 0.0737 0.189 -0.156 -- -- 0.0233 5.78 55.65 1051 -- --
118.58 0.507 3.29 0.121 -- -0.409 -- 1.84 0.043 -- 49.98 4300 -- --
119.49 0.512 3.33 0.0418 0.184 -- -0.306 -- 0.0476 5.62 -- -- -- --
119.65 0.512 3.33 0.0412 0.186 -- -- -- 0.0493 6.28 -- -- -- --
120.83 0.512 3.34 0.0734 -- -0.149 -- -- 0.0309 -- 55.94 980 -- --
119.11 0.508 3.34 -- 0.19 -0.142 -- -- 0.0184 5.81 55.47 1051 -- --
121.44 0.515 3.33 0.0462 -- -- -- -- 0.0533 -- -- -- -- --
119.7 0.512 3.33 -- 0.186 -- -- -- 0.0447 6.27 -- -- -- --
120.97 0.512 3.34 -- -- -0.136 -- -- 0.0246 -- 55.09 980 -- --
121.5 0.514 3.34 -- -- -- -- -- 0.0482 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.79 temperature 25.0 90 > th dose independent rect. 1 3
2 104.91 temperature 25.0 90 > th dose dependent rect. 2 2
3 105.07 temperature 25.0 270 > th dose independent rect. 1 1
6 105.71 temperature 25.0 90 > th dose dependent rect. 1 4
13 106.41 radiation 1.0 43200 < th dose dependent rect. 3 1
15 106.47 atmosphere 1005.0 30 > th dose independent rect. 2 1
17 106.49 atmosphere 1000.0 30 > th dose dependent rect. 2 1
23 106.63 wind 3.0 30 < th dose independent rect. 2 1
24 106.65 wind 5.0 30 < th dose dependent rect. 2 1
30 106.73 humidity 80.0 30 > th dose independent rect. 2 1
31 106.74 humidity 50.0 30 > th dose dependent rect. 2 1
35 106.76 temperature 10.0 30 > th dose independent rect. 2 1
37 106.76 temperature 30.0 30 < th dose independent rect. 2 1
38 106.76 humidity 50.0 30 > th dose independent rect. 2 1
42 106.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
44 106.76 radiation 1.0 30 < th dose independent rect. 2 1
49 106.76 precipitation 0.1 30 < th dose independent rect. 2 1
50 106.76 temperature 10.0 30 > th dose independent rect. 3 23
51 106.76 radiation 1.0 30 < th dose dependent rect. 2 1
56 106.76 precipitation 0.1 30 < th dose dependent rect. 2 1
63 107.12 atmosphere 1005.0 30 > th dose dependent rect. 2 3
66 107.25 atmosphere 1015.0 30 < th dose dependent rect. 2 1
69 107.41 temperature 30.0 30 < th dose dependent rect. 2 1
70 107.48 wind 1.0 30 > th dose independent rect. 2 1
84 107.66 wind 9.0 1440 < th dose independent rect. 3 1
86 107.66 temperature 10.0 1440 > th dose independent rect. 3 1
89 107.66 temperature 30.0 1440 < th dose independent rect. 3 1
93 107.66 humidity 50.0 1440 > th dose independent rect. 3 1
102 107.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
103 107.66 radiation 1.0 1440 < th dose independent rect. 3 1
123 107.66 temperature 10.0 1440 > th dose independent rect. 4 23
152 108.47 atmosphere 1000.0 30 > th dose independent rect. 3 23
188 109.06 precipitation 0.1 720 < th dose independent rect. 15 8
189 109.06 precipitation 0.1 720 < th dose dependent rect. 15 8
191 109.15 wind 9.0 30 < th dose independent rect. 3 23
194 109.30 atmosphere 995.0 720 > th dose independent rect. 23 16
196 109.39 temperature 10.0 720 > th dose independent rect. 15 8
197 109.39 temperature 10.0 720 > th dose independent rect. 23 16
200 109.43 precipitation 0.1 30 < th dose independent rect. 3 23
201 109.43 precipitation 0.1 30 < th dose dependent rect. 3 23
202 109.66 temperature 10.0 720 > th dose independent rect. 3 8
203 109.66 atmosphere 995.0 720 > th dose independent rect. 3 8
204 109.66 temperature 10.0 720 > th dose independent rect. 11 16
210 109.87 humidity 50.0 720 > th dose independent rect. 3 8
211 109.88 wind 9.0 720 < th dose independent rect. 3 8
221 110.14 precipitation 0.1 720 < th dose independent rect. 11 16
222 110.14 precipitation 0.1 720 < th dose dependent rect. 11 16
247 110.79 radiation 40.0 720 < th dose independent rect. 15 8
253 110.89 atmosphere 995.0 720 > th dose independent rect. 15 8
257 111.06 atmosphere 995.0 720 > th dose independent rect. 11 16
263 111.24 atmosphere 1015.0 720 < th dose independent rect. 3 8
265 111.30 atmosphere 1005.0 30 > th dose independent rect. 2 3
266 111.42 wind 5.0 30 > th dose dependent rect. 1 7
269 111.45 wind 3.0 30 < th dose dependent rect. 2 3
281 111.62 wind 5.0 90 > th dose independent rect. 7 1
289 111.69 wind 5.0 90 > th dose dependent rect. 5 3
291 111.70 wind 5.0 90 > th dose dependent rect. 7 1
298 111.77 wind 5.0 10 > th dose independent rect. 1 7
301 111.81 radiation 20.0 90 > th dose independent rect. 6 1
315 111.81 radiation 20.0 90 > th dose dependent rect. 6 1
356 112.08 wind 5.0 10 > th dose independent rect. 7 1
360 112.09 precipitation 0.1 720 < th dose independent rect. 3 8
361 112.09 precipitation 0.1 720 < th dose dependent rect. 3 8
363 112.13 humidity 50.0 30 > th dose independent rect. 3 23
368 112.29 humidity 90.0 10 < th dose independent rect. 4 1
373 112.41 precipitation 0.1 720 < th dose independent rect. 23 16
375 112.41 precipitation 0.1 720 < th dose dependent rect. 23 16
392 112.43 wind 3.0 30 < th dose independent rect. 2 3
403 112.47 humidity 80.0 90 < th dose dependent rect. 6 2
414 112.61 wind 9.0 720 < th dose independent rect. 23 16
435 112.82 wind 1.0 30 > th dose independent rect. 4 1
464 113.00 temperature 20.0 270 < th dose dependent rect. 4 2
476 113.16 temperature 20.0 270 < th dose independent rect. 5 2
477 113.16 wind 1.0 720 > th dose independent rect. 15 8
478 113.20 humidity 90.0 90 < th dose independent rect. 2 1
481 113.21 atmosphere 1005.0 10 > th dose dependent rect. 4 1
482 113.26 wind 9.0 1440 < th dose independent rect. 3 3
483 113.26 temperature 10.0 1440 > th dose independent rect. 3 3
486 113.26 temperature 30.0 1440 < th dose independent rect. 3 3
490 113.26 humidity 50.0 1440 > th dose independent rect. 3 3
499 113.26 atmosphere 995.0 1440 > th dose independent rect. 3 3
500 113.26 radiation 20.0 1440 < th dose independent rect. 3 3
510 113.26 temperature 25.0 720 < th dose independent rect. 20 6
511 113.26 temperature 10.0 1440 > th dose independent rect. 6 21
520 113.34 wind 1.0 30 > th dose dependent rect. 4 1
526 113.36 temperature 25.0 10 > th dose independent rect. 4 1
529 113.37 radiation 1.0 30 < th dose dependent rect. 2 12
531 113.38 temperature 25.0 90 > th dose dependent rect. 4 1
533 113.39 temperature 25.0 720 < th dose independent rect. 21 4
545 113.43 radiation 1.0 10 < th dose independent rect. 2 12
553 113.48 precipitation 0.1 30 < th dose independent rect. 2 3
556 113.48 precipitation 0.1 30 < th dose dependent rect. 2 3
558 113.49 wind 9.0 720 < th dose independent rect. 15 8
559 113.50 humidity 80.0 30 > th dose independent rect. 2 3
560 113.50 atmosphere 1000.0 30 > th dose independent rect. 5 21
566 113.54 temperature 20.0 10 > th dose independent rect. 2 3
569 113.55 wind 9.0 30 < th dose independent rect. 5 21
573 113.56 temperature 10.0 30 > th dose independent rect. 2 3
575 113.56 temperature 30.0 30 < th dose independent rect. 2 3
576 113.56 humidity 50.0 30 > th dose independent rect. 2 3
579 113.56 atmosphere 995.0 30 > th dose independent rect. 2 3
580 113.56 atmosphere 1010.0 30 < th dose independent rect. 2 3
582 113.56 radiation 1.0 30 < th dose independent rect. 2 3
587 113.56 temperature 10.0 30 > th dose independent rect. 5 21
589 113.56 radiation 20.0 30 < th dose dependent rect. 2 3
594 113.59 radiation 1.0 30 < th dose dependent rect. 2 10
600 113.61 radiation 1.0 30 < th dose dependent rect. 2 6
614 113.63 precipitation 0.1 30 < th dose independent rect. 5 21
615 113.63 precipitation 0.1 30 < th dose dependent rect. 5 21
626 113.69 radiation 1.0 10 < th dose independent rect. 2 10
634 113.71 radiation 1.0 10 < th dose independent rect. 2 6
714 113.90 humidity 90.0 90 < th dose independent rect. 2 3
742 114.00 temperature 25.0 1440 < th dose independent rect. 1 1
762 114.11 temperature 25.0 720 > th dose independent rect. 22 1
764 114.11 humidity 90.0 720 < th dose independent rect. 1 4
770 114.14 humidity 80.0 90 < th dose independent rect. 6 2
781 114.18 temperature 30.0 30 < th dose independent rect. 3 23
788 114.21 humidity 50.0 720 > th dose independent rect. 23 16
793 114.23 humidity 50.0 30 > th dose dependent rect. 2 3
800 114.25 atmosphere 1000.0 30 > th dose independent rect. 23 23
803 114.26 humidity 50.0 30 > th dose independent rect. 5 21
807 114.27 wind 1.0 14400 < th dose dependent rect. 6 1
817 114.30 temperature 25.0 720 < th dose independent rect. 23 2
819 114.30 humidity 80.0 14400 < th dose dependent rect. 7 2
820 114.30 humidity 80.0 14400 < th dose dependent rect. 5 4
832 114.38 humidity 90.0 720 > th dose independent rect. 3 1
836 114.39 temperature 25.0 720 > th dose dependent rect. 5 3
868 114.48 wind 9.0 720 < th dose dependent rect. 2 1
874 114.51 temperature 20.0 270 < th dose dependent sin 2 NA
881 114.53 temperature 25.0 720 < th dose independent rect. 20 9
891 114.56 temperature 25.0 720 > th dose dependent rect. 21 1
917 114.59 humidity 70.0 14400 > th dose independent rect. 8 1
923 114.61 temperature 30.0 720 < th dose independent rect. 15 8
932 114.62 temperature 25.0 30 > th dose dependent rect. 17 18
951 114.65 radiation 40.0 30 < th dose independent rect. 14 12
953 114.65 temperature 20.0 30 > th dose dependent rect. 22 7
962 114.67 temperature 25.0 30 > th dose dependent rect. 24 11
969 114.69 temperature 30.0 30 < th dose independent rect. 5 21
974 114.70 wind 1.0 10 > th dose independent rect. 23 23
975 114.71 precipitation 0.1 1440 < th dose independent rect. 23 1
979 114.71 temperature 30.0 30 < th dose dependent rect. 4 1
980 114.71 precipitation 0.1 1440 < th dose dependent rect. 23 1
983 114.71 wind 9.0 30 < th dose dependent rect. 3 23
984 114.72 wind 5.0 30 < th dose independent rect. 4 1
986 114.72 humidity 70.0 14400 < th dose independent rect. 8 1
991 114.72 humidity 70.0 14400 > th dose independent rect. 4 5
996 114.72 humidity 70.0 14400 > th dose independent rect. 24 9
999 114.72 humidity 70.0 14400 > th dose independent rect. 22 11